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| Mutant Information |
|---|
| Mutant Name | FN4140-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4140-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8758977 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 4033708 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 6287845 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g085000 |
| SBS | Chr2 | 33173106 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 33208055 | T-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g341400 |
| SBS | Chr3 | 14174319 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 21925847 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 23484841 | T-A | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 23484842 | G-T | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 23484843 | G-T | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 35640242 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 14135621 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 15375510 | T-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr4 | 18656724 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 3623783 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 29153418 | T-C | Hetero | SPLICE_SITE_REGION | |
| SBS | Chr5 | 29295804 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 6642281 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 18186911 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 19503481 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 21639342 | G-T | Homo | INTRON | |
| SBS | Chr6 | 22334519 | A-C | Hetero | INTRON | |
| SBS | Chr7 | 19109136 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 28816043 | G-T | Homo | STOP_GAINED | OsKitaake07g274900 |
| SBS | Chr8 | 9628809 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr8 | 19815438 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 1896559 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 2630490 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 2630491 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 21242406 | T-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake11g168200 |
| SBS | Chr11 | 23773741 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 13242363 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 23902779 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 26376514 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 26610548 | T-G | Hetero | INTERGENIC |
Deletions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 796814 | 796827 | 13 | |
| Deletion | Chr10 | 13579483 | 13579484 | 1 | |
| Deletion | Chr7 | 19189765 | 19189768 | 3 | OsKitaake07g155600 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 34972946 | 34972949 | 2 | |
| Insertion | Chr11 | 2905752 | 2905754 | 1 | |
| Insertion | Chr11 | 21805596 | 21805599 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 10982698 | 11552123 | |
| Inversion | Chr4 | 10982699 | 11552131 |
Translocations: 8
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 1548196 | Chr6 | 30563903 | 2 |
| Translocation | Chr8 | 1548308 | Chr6 | 30563897 | 2 |
| Translocation | Chr10 | 2962528 | Chr4 | 32025123 | |
| Translocation | Chr10 | 2962977 | Chr4 | 32025118 | |
| Translocation | Chr6 | 11132173 | Chr3 | 3584302 | 2 |
| Translocation | Chr6 | 11132983 | Chr3 | 3584157 | 2 |
| Translocation | Chr4 | 14664067 | Chr3 | 3584301 | 2 |
| Translocation | Chr4 | 14668318 | Chr3 | 3584155 | 2 |