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| Mutant Information |
|---|
| Mutant Name | FN4141-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4141-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 34763111 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 2565659 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 5977592 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 7284669 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 12344052 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 16852737 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 27577385 | T-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 967355 | C-A | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 26781713 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 27450822 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 31818268 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 701999 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 1330907 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g010100 |
| SBS | Chr4 | 1836867 | G-A | Hetero | INTRON | |
| SBS | Chr4 | 3309718 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 3505842 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 10358202 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 14885345 | G-A | Hetero | INTRON | |
| SBS | Chr4 | 27608714 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 14898739 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 5310606 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 7109392 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 8760668 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 23174831 | G-C | Homo | INTERGENIC | |
| SBS | Chr6 | 23668719 | C-A | Homo | INTERGENIC | |
| SBS | Chr7 | 316936 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 21319534 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr8 | 24292012 | A-T | Homo | INTERGENIC | |
| SBS | Chr9 | 1589857 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 13280092 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 10146697 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 16981109 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 11057727 | T-G | Homo | INTERGENIC | |
| SBS | Chr12 | 13200841 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 13200846 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 21605374 | G-T | Hetero | INTERGENIC |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 10116955 | 10116956 | 1 | |
| Deletion | Chr10 | 10547661 | 10547684 | 23 | |
| Deletion | Chr9 | 11647031 | 11647032 | 1 | |
| Deletion | Chr11 | 12487231 | 12487240 | 9 | |
| Deletion | Chr5 | 13792504 | 13792505 | 1 | |
| Deletion | Chr3 | 15389001 | 15399000 | 9999 | OsKitaake03g199100 |
| Deletion | Chr8 | 16644329 | 16644332 | 3 | |
| Deletion | Chr9 | 16912451 | 16912520 | 69 | |
| Deletion | Chr1 | 22286692 | 22286697 | 5 | |
| Deletion | Chr7 | 23501643 | 23501646 | 3 | |
| Deletion | Chr6 | 23843679 | 23843680 | 1 | |
| Deletion | Chr8 | 24214889 | 24214899 | 10 | |
| Deletion | Chr6 | 25934306 | 25934308 | 2 | |
| Deletion | Chr1 | 26110481 | 26110496 | 15 | |
| Deletion | Chr1 | 29694672 | 29694675 | 3 | OsKitaake01g291600 |
| Deletion | Chr1 | 36728038 | 36728039 | 1 | |
| Deletion | Chr1 | 42761903 | 42761906 | 3 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 6257263 | 6257266 | 2 | |
| Insertion | Chr1 | 25094185 | 25094188 | 2 | |
| Insertion | Chr1 | 28636221 | 28636224 | 2 | |
| Insertion | Chr2 | 36485977 | 36485980 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 165731 | 933453 | OsKitaake03g002600 |
| Inversion | Chr3 | 165736 | 933461 | OsKitaake03g002600 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 18113440 | Chr9 | 502308 |