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Mutant Information

Mutant Name	FN4142-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4142-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8034761 A-T Hetero INTERGENIC
SBS Chr1 43963479 G-A Homo INTERGENIC
SBS Chr2 3747976 C-T Homo NON_SYNONYMOUS_CODING OsKitaake02g053901
SBS Chr2 9643735 C-T Hetero INTERGENIC
SBS Chr3 10376039 C-G Hetero INTERGENIC
SBS Chr3 10712201 A-G Hetero UTR_3_PRIME
SBS Chr3 13366399 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g178500
SBS Chr3 17261017 C-A Hetero INTRON
SBS Chr3 25829840 C-A Hetero UTR_5_PRIME
SBS Chr4 27311128 C-T Hetero INTERGENIC
SBS Chr4 29910872 G-A Hetero INTERGENIC
SBS Chr4 34158579 C-T Hetero INTERGENIC
SBS Chr5 7684513 G-A Hetero INTERGENIC
SBS Chr6 14762938 C-T Hetero INTERGENIC
SBS Chr6 18831082 G-T Hetero INTERGENIC
SBS Chr6 23313332 C-A Homo NON_SYNONYMOUS_CODING OsKitaake06g205600
SBS Chr6 23313339 G-A Homo NON_SYNONYMOUS_CODING OsKitaake06g205600
SBS Chr6 23375199 G-A Hetero INTERGENIC
SBS Chr7 6509757 T-A Hetero UTR_3_PRIME
SBS Chr7 12622269 G-A Hetero INTERGENIC
SBS Chr7 20084356 C-T Homo SYNONYMOUS_CODING
SBS Chr7 21119896 C-A Homo INTERGENIC
SBS Chr7 28332926 G-A Hetero INTRON
SBS Chr8 3406560 C-T Hetero INTERGENIC
SBS Chr8 4124936 G-A Hetero INTRON
SBS Chr8 24796332 A-T Hetero INTERGENIC
SBS Chr10 16233791 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g109400
SBS Chr10 17605256 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g120600
SBS Chr10 19151910 G-A Hetero STOP_GAINED OsKitaake10g138100
SBS Chr11 11791031 C-A Hetero INTERGENIC
SBS Chr11 15994934 C-A Hetero INTERGENIC
SBS Chr11 27710519 A-T Hetero INTERGENIC
SBS Chr11 29232252 T-A Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 125062 125081 19
Deletion Chr7 1234952 1234966 14
Deletion Chr4 5358819 5358820 1
Deletion Chr2 6925748 6925750 2
Deletion Chr1 9108001 9156000 47999 5
Deletion Chr11 18635001 18673000 37999 5
Deletion Chr12 19401800 19401892 92
Deletion Chr12 22432645 22432657 12
Deletion Chr11 29399982 29399983 1
Deletion Chr1 29495001 29534000 38999 4
Deletion Chr7 29530915 29530916 1 OsKitaake07g284600
Deletion Chr2 30279070 30279072 2
Deletion Chr1 30922358 30922359 1
Deletion Chr1 31415027 31415028 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 12197822 12197825 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 18877944 18886784

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 8611269 Chr8 19292016
Translocation Chr11 13744240 Chr3 10703802
Translocation Chr10 22888459 Chr3 18877984 OsKitaake10g191100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8034761	A-T	Hetero	INTERGENIC
SBS	Chr1	43963479	G-A	Homo	INTERGENIC
SBS	Chr2	3747976	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g053901
SBS	Chr2	9643735	C-T	Hetero	INTERGENIC
SBS	Chr3	10376039	C-G	Hetero	INTERGENIC
SBS	Chr3	10712201	A-G	Hetero	UTR_3_PRIME
SBS	Chr3	13366399	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g178500
SBS	Chr3	17261017	C-A	Hetero	INTRON
SBS	Chr3	25829840	C-A	Hetero	UTR_5_PRIME
SBS	Chr4	27311128	C-T	Hetero	INTERGENIC
SBS	Chr4	29910872	G-A	Hetero	INTERGENIC
SBS	Chr4	34158579	C-T	Hetero	INTERGENIC
SBS	Chr5	7684513	G-A	Hetero	INTERGENIC
SBS	Chr6	14762938	C-T	Hetero	INTERGENIC
SBS	Chr6	18831082	G-T	Hetero	INTERGENIC
SBS	Chr6	23313332	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g205600
SBS	Chr6	23313339	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g205600
SBS	Chr6	23375199	G-A	Hetero	INTERGENIC
SBS	Chr7	6509757	T-A	Hetero	UTR_3_PRIME
SBS	Chr7	12622269	G-A	Hetero	INTERGENIC
SBS	Chr7	20084356	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr7	21119896	C-A	Homo	INTERGENIC
SBS	Chr7	28332926	G-A	Hetero	INTRON
SBS	Chr8	3406560	C-T	Hetero	INTERGENIC
SBS	Chr8	4124936	G-A	Hetero	INTRON
SBS	Chr8	24796332	A-T	Hetero	INTERGENIC
SBS	Chr10	16233791	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g109400
SBS	Chr10	17605256	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g120600
SBS	Chr10	19151910	G-A	Hetero	STOP_GAINED	OsKitaake10g138100
SBS	Chr11	11791031	C-A	Hetero	INTERGENIC
SBS	Chr11	15994934	C-A	Hetero	INTERGENIC
SBS	Chr11	27710519	A-T	Hetero	INTERGENIC
SBS	Chr11	29232252	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	125062	125081	19
Deletion	Chr7	1234952	1234966	14
Deletion	Chr4	5358819	5358820	1
Deletion	Chr2	6925748	6925750	2
Deletion	Chr1	9108001	9156000	47999	5
Deletion	Chr11	18635001	18673000	37999	5
Deletion	Chr12	19401800	19401892	92
Deletion	Chr12	22432645	22432657	12
Deletion	Chr11	29399982	29399983	1
Deletion	Chr1	29495001	29534000	38999	4
Deletion	Chr7	29530915	29530916	1	OsKitaake07g284600
Deletion	Chr2	30279070	30279072	2
Deletion	Chr1	30922358	30922359	1
Deletion	Chr1	31415027	31415028	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	18877944	18886784

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes