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Mutant Information

Mutant Name	FN4143-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4143-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13738926 T-G Homo SYNONYMOUS_CODING
SBS Chr1 17302428 G-A Homo INTERGENIC
SBS Chr2 211904 A-T Homo INTRON
SBS Chr2 21586718 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 23791540 G-A Homo INTERGENIC
SBS Chr3 34656301 C-T Hetero INTERGENIC
SBS Chr4 30128068 A-G Hetero INTERGENIC
SBS Chr4 32413571 C-T Hetero INTERGENIC
SBS Chr5 10406093 C-T Hetero INTERGENIC
SBS Chr5 19077789 G-A Hetero INTERGENIC
SBS Chr5 19627353 T-G Hetero INTERGENIC
SBS Chr5 23661291 T-A Hetero INTERGENIC
SBS Chr6 1298283 T-C Homo INTERGENIC
SBS Chr6 6253072 T-G Homo INTRON
SBS Chr6 19882779 G-T Hetero SYNONYMOUS_CODING
SBS Chr6 25032845 T-C Hetero INTERGENIC
SBS Chr7 865992 G-A Hetero INTERGENIC
SBS Chr7 6920950 G-A Hetero INTERGENIC
SBS Chr7 17588621 A-G Homo INTRON
SBS Chr8 11538260 G-A Homo INTERGENIC
SBS Chr8 12570123 C-T Homo INTERGENIC
SBS Chr8 22865541 T-G Hetero INTERGENIC
SBS Chr9 22699694 C-T Homo INTERGENIC
SBS Chr10 8895225 C-T Hetero INTERGENIC
SBS Chr10 13396762 C-T Hetero INTERGENIC
SBS Chr10 13804932 T-A Hetero INTERGENIC
SBS Chr10 13997139 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g086400
SBS Chr11 9117352 G-T Hetero INTERGENIC
SBS Chr11 20170841 C-T Homo INTERGENIC
SBS Chr12 7465785 T-C Hetero INTERGENIC
SBS Chr12 9152850 A-G Hetero INTERGENIC
SBS Chr12 13918099 A-G Hetero INTERGENIC
SBS Chr12 16372012 C-T Hetero INTERGENIC
SBS Chr12 18956874 G-A Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 4284001 4596000 311999 22
Deletion Chr10 4842803 4842804 1
Deletion Chr5 6606721 6606729 8
Deletion Chr12 7465769 7465774 5
Deletion Chr1 7996282 7996285 3
Deletion Chr8 13669291 13669292 1
Deletion Chr6 20141030 20141041 11
Deletion Chr9 21733215 21733216 1
Deletion Chr12 24137609 24137611 2
Deletion Chr1 35790678 35790699 21

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 15203526 15203530 3

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 3578922 4284618 2
Inversion Chr3 10755181 10959843
Inversion Chr3 10755183 10959850

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 12540491 Chr4 14837096 OsKitaake04g070250
Translocation Chr11 12540495 Chr4 14822811 OsKitaake04g070200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13738926	T-G	Homo	SYNONYMOUS_CODING
SBS	Chr1	17302428	G-A	Homo	INTERGENIC
SBS	Chr2	211904	A-T	Homo	INTRON
SBS	Chr2	21586718	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	23791540	G-A	Homo	INTERGENIC
SBS	Chr3	34656301	C-T	Hetero	INTERGENIC
SBS	Chr4	30128068	A-G	Hetero	INTERGENIC
SBS	Chr4	32413571	C-T	Hetero	INTERGENIC
SBS	Chr5	10406093	C-T	Hetero	INTERGENIC
SBS	Chr5	19077789	G-A	Hetero	INTERGENIC
SBS	Chr5	19627353	T-G	Hetero	INTERGENIC
SBS	Chr5	23661291	T-A	Hetero	INTERGENIC
SBS	Chr6	1298283	T-C	Homo	INTERGENIC
SBS	Chr6	6253072	T-G	Homo	INTRON
SBS	Chr6	19882779	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	25032845	T-C	Hetero	INTERGENIC
SBS	Chr7	865992	G-A	Hetero	INTERGENIC
SBS	Chr7	6920950	G-A	Hetero	INTERGENIC
SBS	Chr7	17588621	A-G	Homo	INTRON
SBS	Chr8	11538260	G-A	Homo	INTERGENIC
SBS	Chr8	12570123	C-T	Homo	INTERGENIC
SBS	Chr8	22865541	T-G	Hetero	INTERGENIC
SBS	Chr9	22699694	C-T	Homo	INTERGENIC
SBS	Chr10	8895225	C-T	Hetero	INTERGENIC
SBS	Chr10	13396762	C-T	Hetero	INTERGENIC
SBS	Chr10	13804932	T-A	Hetero	INTERGENIC
SBS	Chr10	13997139	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g086400
SBS	Chr11	9117352	G-T	Hetero	INTERGENIC
SBS	Chr11	20170841	C-T	Homo	INTERGENIC
SBS	Chr12	7465785	T-C	Hetero	INTERGENIC
SBS	Chr12	9152850	A-G	Hetero	INTERGENIC
SBS	Chr12	13918099	A-G	Hetero	INTERGENIC
SBS	Chr12	16372012	C-T	Hetero	INTERGENIC
SBS	Chr12	18956874	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	4284001	4596000	311999	22
Deletion	Chr10	4842803	4842804	1
Deletion	Chr5	6606721	6606729	8
Deletion	Chr12	7465769	7465774	5
Deletion	Chr1	7996282	7996285	3
Deletion	Chr8	13669291	13669292	1
Deletion	Chr6	20141030	20141041	11
Deletion	Chr9	21733215	21733216	1
Deletion	Chr12	24137609	24137611	2
Deletion	Chr1	35790678	35790699	21

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	3578922	4284618	2
Inversion	Chr3	10755181	10959843
Inversion	Chr3	10755183	10959850

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes