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| Mutant Information |
|---|
| Mutant Name | FN4144-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4144-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 19
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 13380471 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 17946351 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 33648123 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 14877700 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 29152160 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 30490104 | C-T | Homo | INTRON | |
| SBS | Chr3 | 35621695 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 21109017 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 22600038 | G-A | Hetero | INTRON | |
| SBS | Chr6 | 49798 | C-A | Homo | INTERGENIC | |
| SBS | Chr6 | 15436159 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 4589462 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr8 | 1056018 | C-G | Homo | INTRON | |
| SBS | Chr8 | 12975139 | C-G | Homo | INTERGENIC | |
| SBS | Chr8 | 15903229 | T-C | Homo | INTRON | |
| SBS | Chr9 | 5544161 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 2761234 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 7810521 | T-G | Hetero | INTRON | |
| SBS | Chr12 | 16014598 | T-A | Hetero | INTERGENIC |
Deletions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 59304 | 59312 | 8 | |
| Deletion | Chr3 | 9752001 | 9879000 | 126999 | 21 |
| Deletion | Chr5 | 18414718 | 18414722 | 4 | |
| Deletion | Chr3 | 19998118 | 19998119 | 1 | OsKitaake03g230101 |
| Deletion | Chr11 | 28287625 | 28287627 | 2 | |
| Deletion | Chr3 | 33025789 | 33025810 | 21 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 22809292 | 22809295 | 2 | |
| Insertion | Chr12 | 16545651 | 16545655 | 3 |
Inversions: 10
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 4293306 | 4296300 | |
| Inversion | Chr9 | 9204048 | 9407096 | |
| Inversion | Chr3 | 9634928 | 9753012 | 2 |
| Inversion | Chr3 | 9639387 | 9874274 | OsKitaake03g135000 |
| Inversion | Chr3 | 9749814 | 10664604 | OsKitaake03g132800 |
| Inversion | Chr3 | 9749820 | 10664607 | OsKitaake03g132800 |
| Inversion | Chr6 | 10598327 | 10976369 | OsKitaake06g119100 |
| Inversion | Chr6 | 10598331 | 10976619 | OsKitaake06g119100 |
| Inversion | Chr6 | 13897309 | 14890992 | |
| Inversion | Chr6 | 13897310 | 14890989 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 4296304 | Chr3 | 13915380 | |
| Translocation | Chr5 | 5666710 | Chr3 | 12369121 | OsKitaake03g166400 |
| Translocation | Chr6 | 10976604 | Chr3 | 13915382 | |
| Translocation | Chr6 | 10976605 | Chr5 | 4295933 | |
| Translocation | Chr8 | 17124546 | Chr3 | 1141156 |