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Mutant Information

Mutant Name	FN4145-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4145-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6561350 C-G Hetero INTERGENIC
SBS Chr1 6641717 C-T Hetero INTERGENIC
SBS Chr1 33710969 C-A Hetero INTERGENIC
SBS Chr2 35021575 C-T Homo NON_SYNONYMOUS_CODING OsKitaake02g365900
SBS Chr3 9485038 G-A Homo INTERGENIC
SBS Chr4 498170 G-C Homo INTERGENIC
SBS Chr4 11372792 G-A Hetero INTERGENIC
SBS Chr4 28480761 T-G Hetero INTERGENIC
SBS Chr4 34427296 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 1872573 G-A Hetero INTERGENIC
SBS Chr5 6263333 C-A Hetero INTERGENIC
SBS Chr5 15165133 T-C Hetero INTERGENIC
SBS Chr5 20693258 A-G Homo INTRON
SBS Chr6 12581966 C-T Homo INTERGENIC
SBS Chr6 28251342 T-G Homo INTERGENIC
SBS Chr8 1347946 C-T Homo INTERGENIC
SBS Chr8 23169504 G-T Homo INTERGENIC
SBS Chr8 23392480 C-T Homo INTRON
SBS Chr10 16456899 C-A Hetero INTERGENIC
SBS Chr10 22068091 G-A Homo INTERGENIC
SBS Chr12 16855784 G-A Hetero INTERGENIC
SBS Chr12 17386225 C-G Hetero UTR_5_PRIME

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 4021636 4021644 8
Deletion Chr10 6008877 6008879 2
Deletion Chr8 8691807 8691808 1
Deletion Chr6 9061636 9061637 1
Deletion Chr5 10304566 10304567 1
Deletion Chr12 14229930 14229947 17
Deletion Chr1 15162054 15162064 10
Deletion Chr11 15979178 15979183 5
Deletion Chr6 16377655 16377657 2
Deletion Chr4 20940661 20940662 1
Deletion Chr4 22842059 22842065 6
Deletion Chr8 23168227 23168234 7
Deletion Chr2 24687380 24687383 3

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 25535087 25535090 2
Insertion Chr6 237448 237452 3
Insertion Chr10 246650 246657 6
Insertion Chr4 11035443 11035445 1
Insertion Chr9 10068067 10068069 1

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 12007288 Chr2 5044949 OsKitaake11g111300
Translocation Chr11 12018349 Chr2 5044949 OsKitaake11g111300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6561350	C-G	Hetero	INTERGENIC
SBS	Chr1	6641717	C-T	Hetero	INTERGENIC
SBS	Chr1	33710969	C-A	Hetero	INTERGENIC
SBS	Chr2	35021575	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g365900
SBS	Chr3	9485038	G-A	Homo	INTERGENIC
SBS	Chr4	498170	G-C	Homo	INTERGENIC
SBS	Chr4	11372792	G-A	Hetero	INTERGENIC
SBS	Chr4	28480761	T-G	Hetero	INTERGENIC
SBS	Chr4	34427296	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	1872573	G-A	Hetero	INTERGENIC
SBS	Chr5	6263333	C-A	Hetero	INTERGENIC
SBS	Chr5	15165133	T-C	Hetero	INTERGENIC
SBS	Chr5	20693258	A-G	Homo	INTRON
SBS	Chr6	12581966	C-T	Homo	INTERGENIC
SBS	Chr6	28251342	T-G	Homo	INTERGENIC
SBS	Chr8	1347946	C-T	Homo	INTERGENIC
SBS	Chr8	23169504	G-T	Homo	INTERGENIC
SBS	Chr8	23392480	C-T	Homo	INTRON
SBS	Chr10	16456899	C-A	Hetero	INTERGENIC
SBS	Chr10	22068091	G-A	Homo	INTERGENIC
SBS	Chr12	16855784	G-A	Hetero	INTERGENIC
SBS	Chr12	17386225	C-G	Hetero	UTR_5_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	4021636	4021644	8
Deletion	Chr10	6008877	6008879	2
Deletion	Chr8	8691807	8691808	1
Deletion	Chr6	9061636	9061637	1
Deletion	Chr5	10304566	10304567	1
Deletion	Chr12	14229930	14229947	17
Deletion	Chr1	15162054	15162064	10
Deletion	Chr11	15979178	15979183	5
Deletion	Chr6	16377655	16377657	2
Deletion	Chr4	20940661	20940662	1
Deletion	Chr4	22842059	22842065	6
Deletion	Chr8	23168227	23168234	7
Deletion	Chr2	24687380	24687383	3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	12007288	Chr2	5044949	OsKitaake11g111300
Translocation	Chr11	12018349	Chr2	5044949	OsKitaake11g111300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes