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Mutant Information

Mutant Name	FN4146-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4146-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 229303 G-A Homo INTERGENIC
SBS Chr1 13356549 A-T Hetero INTERGENIC
SBS Chr2 4368581 T-G Hetero INTRON
SBS Chr2 10133149 A-G Homo INTRON
SBS Chr2 14746905 T-C Homo INTERGENIC
SBS Chr2 24895263 A-T Hetero INTERGENIC
SBS Chr2 29743195 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g300800
SBS Chr2 29991016 T-A Hetero INTRON
SBS Chr3 18781093 G-T Hetero INTERGENIC
SBS Chr3 18781094 A-T Hetero INTERGENIC
SBS Chr3 30988471 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g325400
SBS Chr4 10351585 C-T Hetero INTERGENIC
SBS Chr4 14948318 C-G Hetero INTERGENIC
SBS Chr4 30887957 G-A Hetero INTERGENIC
SBS Chr5 5676350 A-T Hetero NON_SYNONYMOUS_START
SBS Chr5 20903352 A-G Hetero INTERGENIC
SBS Chr5 21061014 A-G Hetero INTERGENIC
SBS Chr5 28927774 T-G Hetero UTR_3_PRIME
SBS Chr7 11741850 A-T Homo INTERGENIC
SBS Chr7 15294222 C-T Hetero INTERGENIC
SBS Chr7 25176301 C-A Hetero INTERGENIC
SBS Chr8 21261836 T-C Hetero INTERGENIC
SBS Chr8 24115163 C-T Hetero INTERGENIC
SBS Chr9 8279741 G-A Hetero INTERGENIC
SBS Chr10 3748865 C-A Hetero INTERGENIC
SBS Chr11 886941 C-T Homo INTERGENIC
SBS Chr11 1202822 C-T Hetero INTERGENIC
SBS Chr11 2119113 G-A Homo NON_SYNONYMOUS_CODING OsKitaake11g031100
SBS Chr11 6544195 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g077800
SBS Chr11 12505190 A-G Hetero INTERGENIC
SBS Chr11 12541926 G-C Hetero INTERGENIC
SBS Chr12 8764744 G-T Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1931212 1931213 1
Deletion Chr8 5459757 5459765 8
Deletion Chr5 6731649 6731651 2
Deletion Chr8 7390888 7390889 1
Deletion Chr7 7533923 7533929 6
Deletion Chr1 11509138 11509141 3
Deletion Chr7 13161183 13161185 2
Deletion Chr1 18300493 18300494 1
Deletion Chr6 19136187 19136188 1
Deletion Chr7 19312014 19312015 1
Deletion Chr9 19871164 19871167 3
Deletion Chr11 22805001 22812000 6999 OsKitaake11g180800
Deletion Chr7 22948812 22948814 2
Deletion Chr11 23303145 23303173 28
Deletion Chr4 25069103 25069105 2
Deletion Chr2 26011335 26011339 4
Deletion Chr3 27369373 27369374 1
Deletion Chr3 27833556 27833561 5
Deletion Chr4 30560001 30654000 93999 9
Deletion Chr1 44248417 44248418 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 8265625 8265628 2
Insertion Chr2 12876411 12876413 1
Insertion Chr3 18315273 18315276 2
Insertion Chr3 27343772 27343775 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 17782709 17794188

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 9398072 Chr1 10278310 OsKitaake11g098300
Translocation Chr11 9398078 Chr1 10277602 OsKitaake11g098300
Translocation Chr9 17945451 Chr3 22779377 2
Translocation Chr9 17946657 Chr3 22779379 2
Translocation Chr11 22804600 Chr1 27576533

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	229303	G-A	Homo	INTERGENIC
SBS	Chr1	13356549	A-T	Hetero	INTERGENIC
SBS	Chr2	4368581	T-G	Hetero	INTRON
SBS	Chr2	10133149	A-G	Homo	INTRON
SBS	Chr2	14746905	T-C	Homo	INTERGENIC
SBS	Chr2	24895263	A-T	Hetero	INTERGENIC
SBS	Chr2	29743195	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g300800
SBS	Chr2	29991016	T-A	Hetero	INTRON
SBS	Chr3	18781093	G-T	Hetero	INTERGENIC
SBS	Chr3	18781094	A-T	Hetero	INTERGENIC
SBS	Chr3	30988471	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g325400
SBS	Chr4	10351585	C-T	Hetero	INTERGENIC
SBS	Chr4	14948318	C-G	Hetero	INTERGENIC
SBS	Chr4	30887957	G-A	Hetero	INTERGENIC
SBS	Chr5	5676350	A-T	Hetero	NON_SYNONYMOUS_START
SBS	Chr5	20903352	A-G	Hetero	INTERGENIC
SBS	Chr5	21061014	A-G	Hetero	INTERGENIC
SBS	Chr5	28927774	T-G	Hetero	UTR_3_PRIME
SBS	Chr7	11741850	A-T	Homo	INTERGENIC
SBS	Chr7	15294222	C-T	Hetero	INTERGENIC
SBS	Chr7	25176301	C-A	Hetero	INTERGENIC
SBS	Chr8	21261836	T-C	Hetero	INTERGENIC
SBS	Chr8	24115163	C-T	Hetero	INTERGENIC
SBS	Chr9	8279741	G-A	Hetero	INTERGENIC
SBS	Chr10	3748865	C-A	Hetero	INTERGENIC
SBS	Chr11	886941	C-T	Homo	INTERGENIC
SBS	Chr11	1202822	C-T	Hetero	INTERGENIC
SBS	Chr11	2119113	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g031100
SBS	Chr11	6544195	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g077800
SBS	Chr11	12505190	A-G	Hetero	INTERGENIC
SBS	Chr11	12541926	G-C	Hetero	INTERGENIC
SBS	Chr12	8764744	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1931212	1931213	1
Deletion	Chr8	5459757	5459765	8
Deletion	Chr5	6731649	6731651	2
Deletion	Chr8	7390888	7390889	1
Deletion	Chr7	7533923	7533929	6
Deletion	Chr1	11509138	11509141	3
Deletion	Chr7	13161183	13161185	2
Deletion	Chr1	18300493	18300494	1
Deletion	Chr6	19136187	19136188	1
Deletion	Chr7	19312014	19312015	1
Deletion	Chr9	19871164	19871167	3
Deletion	Chr11	22805001	22812000	6999	OsKitaake11g180800
Deletion	Chr7	22948812	22948814	2
Deletion	Chr11	23303145	23303173	28
Deletion	Chr4	25069103	25069105	2
Deletion	Chr2	26011335	26011339	4
Deletion	Chr3	27369373	27369374	1
Deletion	Chr3	27833556	27833561	5
Deletion	Chr4	30560001	30654000	93999	9
Deletion	Chr1	44248417	44248418	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	17782709	17794188

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes