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| Mutant Information |
|---|
| Mutant Name | FN4147-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4147-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 11022615 | T-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 11217951 | G-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 12022830 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 17725821 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 11809852 | G-A | Homo | INTRON | |
| SBS | Chr2 | 32096085 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 36349123 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 1567187 | G-T | Hetero | SPLICE_SITE_REGION | |
| SBS | Chr3 | 10143064 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 7348699 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 30143968 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 251254 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 12170535 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 26565464 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 26672630 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 8811998 | T-G | Homo | INTERGENIC | |
| SBS | Chr6 | 23387531 | T-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 2067343 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 19905660 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 26074181 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 13063698 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 21984215 | T-C | Hetero | UTR_3_PRIME | |
| SBS | Chr8 | 22153501 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 5540106 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 11225526 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 21050707 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 5204815 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 5204817 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 15324307 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 507390 | A-T | Homo | INTERGENIC | |
| SBS | Chr12 | 10612685 | G-C | Homo | INTERGENIC | |
| SBS | Chr12 | 12958992 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 13301747 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 13301748 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 19922068 | T-A | Hetero | INTERGENIC |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 158601 | 158609 | 8 | |
| Deletion | Chr2 | 554169 | 554171 | 2 | |
| Deletion | Chr11 | 5329001 | 5338000 | 8999 | |
| Deletion | Chr10 | 5685001 | 5883000 | 197999 | 9 |
| Deletion | Chr6 | 6041198 | 6041203 | 5 | |
| Deletion | Chr3 | 6540555 | 6540561 | 6 | |
| Deletion | Chr1 | 11998001 | 12007000 | 8999 | |
| Deletion | Chr9 | 13026660 | 13026670 | 10 | |
| Deletion | Chr2 | 13368110 | 13368111 | 1 | |
| Deletion | Chr4 | 15327130 | 15327139 | 9 | |
| Deletion | Chr1 | 17199878 | 17200043 | 165 | |
| Deletion | Chr7 | 19401001 | 19575000 | 173999 | 14 |
| Deletion | Chr7 | 19579001 | 19601000 | 21999 | 5 |
| Deletion | Chr7 | 23792506 | 23792514 | 8 | OsKitaake07g209300 |
| Deletion | Chr5 | 24344473 | 24344474 | 1 | |
| Deletion | Chr3 | 28025510 | 28025512 | 2 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 30002164 | 30002167 | 2 | |
| Insertion | Chr3 | 25442227 | 25442229 | 1 | OsKitaake03g268500  |
Inversions: 5