Search Kitaake

Mutant Information

Mutant Name	FN4148-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4148-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 29894743 C-A Hetero INTERGENIC
SBS Chr2 8710473 C-T Homo INTERGENIC
SBS Chr3 2990543 G-A Homo INTERGENIC
SBS Chr3 9975645 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g136400
SBS Chr3 12540329 T-A Hetero INTERGENIC
SBS Chr3 12628403 G-C Hetero INTERGENIC
SBS Chr3 18391333 C-A Homo INTRON
SBS Chr3 18923507 C-A Homo INTERGENIC
SBS Chr3 28498639 A-G Homo INTERGENIC
SBS Chr4 2605665 C-T Hetero INTERGENIC
SBS Chr4 5503680 C-A Hetero INTERGENIC
SBS Chr4 6417573 A-G Hetero INTERGENIC
SBS Chr4 9610193 A-C Hetero INTERGENIC
SBS Chr4 9752007 T-A Hetero INTERGENIC
SBS Chr4 22624294 T-A Homo INTERGENIC
SBS Chr4 32149994 G-A Homo INTERGENIC
SBS Chr4 35675652 G-C Hetero INTERGENIC
SBS Chr5 4119640 C-A Hetero INTERGENIC
SBS Chr5 4119649 T-A Hetero INTERGENIC
SBS Chr5 8227105 C-G Hetero INTERGENIC
SBS Chr5 9033856 A-C Hetero INTERGENIC
SBS Chr6 25857284 C-T Hetero INTERGENIC
SBS Chr7 5890978 G-A Hetero INTERGENIC
SBS Chr7 9962630 A-G Hetero INTRON
SBS Chr7 11195385 A-G Hetero INTERGENIC
SBS Chr7 24180024 A-T Hetero INTERGENIC
SBS Chr8 6827459 G-A Hetero INTRON
SBS Chr8 7943735 G-T Homo INTERGENIC
SBS Chr8 17714475 C-A Hetero INTERGENIC
SBS Chr8 18314003 T-C Hetero INTRON
SBS Chr8 19620825 T-C Homo INTRON
SBS Chr8 27075371 A-G Hetero INTERGENIC
SBS Chr9 6490519 C-T Hetero INTERGENIC
SBS Chr9 11195704 A-G Hetero INTERGENIC
SBS Chr10 6088759 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake10g042300
SBS Chr10 11720589 A-G Hetero INTERGENIC
SBS Chr10 18179119 C-T Hetero UTR_3_PRIME
SBS Chr10 18179140 C-T Hetero UTR_3_PRIME
SBS Chr10 18179145 C-A Hetero UTR_3_PRIME
SBS Chr11 5160845 C-T Homo UTR_3_PRIME

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 56230 56232 2
Deletion Chr11 174085 174100 15
Deletion Chr11 1937481 1937503 22 OsKitaake11g027100
Deletion Chr3 2224156 2224162 6
Deletion Chr2 7872741 7872744 3
Deletion Chr12 9412001 9604000 191999 10
Deletion Chr5 9524332 9524335 3
Deletion Chr12 9607001 9663000 55999 5
Deletion Chr8 11275696 11275698 2
Deletion Chr12 13167001 13186000 18999 8
Deletion Chr11 13817748 13817750 2
Deletion Chr9 14937924 14937934 10
Deletion Chr7 15391596 15391598 2
Deletion Chr3 15727717 15727719 2
Deletion Chr6 18464004 18464025 21
Deletion Chr8 19696975 19696981 6
Deletion Chr9 22160858 22160860 2
Deletion Chr2 27154911 27154912 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 8718554 8718556 1 OsKitaake06g106400
Insertion Chr11 28055924 28055928 3 OsKitaake11g230300

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 40961 119979 2
Inversion Chr12 41855 119986 2
Inversion Chr4 5463116 5939567
Inversion Chr12 8918635 9074846
Inversion Chr12 8918664 9075061

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 9074856 Chr3 16567925 OsKitaake03g209400
Translocation Chr12 9075057 Chr3 16567926 OsKitaake03g209400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	29894743	C-A	Hetero	INTERGENIC
SBS	Chr2	8710473	C-T	Homo	INTERGENIC
SBS	Chr3	2990543	G-A	Homo	INTERGENIC
SBS	Chr3	9975645	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g136400
SBS	Chr3	12540329	T-A	Hetero	INTERGENIC
SBS	Chr3	12628403	G-C	Hetero	INTERGENIC
SBS	Chr3	18391333	C-A	Homo	INTRON
SBS	Chr3	18923507	C-A	Homo	INTERGENIC
SBS	Chr3	28498639	A-G	Homo	INTERGENIC
SBS	Chr4	2605665	C-T	Hetero	INTERGENIC
SBS	Chr4	5503680	C-A	Hetero	INTERGENIC
SBS	Chr4	6417573	A-G	Hetero	INTERGENIC
SBS	Chr4	9610193	A-C	Hetero	INTERGENIC
SBS	Chr4	9752007	T-A	Hetero	INTERGENIC
SBS	Chr4	22624294	T-A	Homo	INTERGENIC
SBS	Chr4	32149994	G-A	Homo	INTERGENIC
SBS	Chr4	35675652	G-C	Hetero	INTERGENIC
SBS	Chr5	4119640	C-A	Hetero	INTERGENIC
SBS	Chr5	4119649	T-A	Hetero	INTERGENIC
SBS	Chr5	8227105	C-G	Hetero	INTERGENIC
SBS	Chr5	9033856	A-C	Hetero	INTERGENIC
SBS	Chr6	25857284	C-T	Hetero	INTERGENIC
SBS	Chr7	5890978	G-A	Hetero	INTERGENIC
SBS	Chr7	9962630	A-G	Hetero	INTRON
SBS	Chr7	11195385	A-G	Hetero	INTERGENIC
SBS	Chr7	24180024	A-T	Hetero	INTERGENIC
SBS	Chr8	6827459	G-A	Hetero	INTRON
SBS	Chr8	7943735	G-T	Homo	INTERGENIC
SBS	Chr8	17714475	C-A	Hetero	INTERGENIC
SBS	Chr8	18314003	T-C	Hetero	INTRON
SBS	Chr8	19620825	T-C	Homo	INTRON
SBS	Chr8	27075371	A-G	Hetero	INTERGENIC
SBS	Chr9	6490519	C-T	Hetero	INTERGENIC
SBS	Chr9	11195704	A-G	Hetero	INTERGENIC
SBS	Chr10	6088759	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g042300
SBS	Chr10	11720589	A-G	Hetero	INTERGENIC
SBS	Chr10	18179119	C-T	Hetero	UTR_3_PRIME
SBS	Chr10	18179140	C-T	Hetero	UTR_3_PRIME
SBS	Chr10	18179145	C-A	Hetero	UTR_3_PRIME
SBS	Chr11	5160845	C-T	Homo	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	56230	56232	2
Deletion	Chr11	174085	174100	15
Deletion	Chr11	1937481	1937503	22	OsKitaake11g027100
Deletion	Chr3	2224156	2224162	6
Deletion	Chr2	7872741	7872744	3
Deletion	Chr12	9412001	9604000	191999	10
Deletion	Chr5	9524332	9524335	3
Deletion	Chr12	9607001	9663000	55999	5
Deletion	Chr8	11275696	11275698	2
Deletion	Chr12	13167001	13186000	18999	8
Deletion	Chr11	13817748	13817750	2
Deletion	Chr9	14937924	14937934	10
Deletion	Chr7	15391596	15391598	2
Deletion	Chr3	15727717	15727719	2
Deletion	Chr6	18464004	18464025	21
Deletion	Chr8	19696975	19696981	6
Deletion	Chr9	22160858	22160860	2
Deletion	Chr2	27154911	27154912	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	40961	119979	2
Inversion	Chr12	41855	119986	2
Inversion	Chr4	5463116	5939567
Inversion	Chr12	8918635	9074846
Inversion	Chr12	8918664	9075061

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes