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Mutant Information

Mutant Name	FN4149-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4149-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4612657 C-T Hetero INTERGENIC
SBS Chr1 9464265 C-T Homo UTR_3_PRIME
SBS Chr1 23105759 A-T Hetero INTERGENIC
SBS Chr1 30627720 A-T Hetero INTERGENIC
SBS Chr2 6296453 G-A Hetero INTRON
SBS Chr2 33768754 G-T Homo INTERGENIC
SBS Chr3 4478739 A-G Homo INTERGENIC
SBS Chr4 1045856 T-C Homo SPLICE_SITE_REGION
SBS Chr4 16300993 G-A Hetero INTERGENIC
SBS Chr4 23185367 G-A Hetero INTERGENIC
SBS Chr4 28798959 C-A Hetero INTERGENIC
SBS Chr4 29639742 A-G Hetero INTERGENIC
SBS Chr5 8294234 A-T Homo INTERGENIC
SBS Chr5 8294235 A-T Homo INTERGENIC
SBS Chr5 8294236 C-T Homo INTERGENIC
SBS Chr5 14006372 G-A Hetero INTERGENIC
SBS Chr5 19296522 A-G Hetero INTERGENIC
SBS Chr5 21909287 C-G Homo INTERGENIC
SBS Chr5 25651752 G-A Hetero INTERGENIC
SBS Chr6 2569408 C-T Hetero INTERGENIC
SBS Chr7 15056423 A-T Hetero INTERGENIC
SBS Chr7 15647493 G-A Homo INTERGENIC
SBS Chr7 17345965 T-C Homo INTERGENIC
SBS Chr7 18373762 C-G Homo INTERGENIC
SBS Chr8 4103768 G-A Hetero INTERGENIC
SBS Chr8 10666824 T-C Hetero INTERGENIC
SBS Chr8 14528028 C-T Homo INTERGENIC
SBS Chr9 7676572 G-A Hetero INTRON
SBS Chr9 10266573 G-T Hetero INTRON
SBS Chr9 10478315 G-A Hetero INTERGENIC
SBS Chr9 13112104 G-C Hetero INTERGENIC
SBS Chr9 14776303 T-C Hetero INTRON
SBS Chr9 17324339 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g130200
SBS Chr10 11041317 C-A Homo INTERGENIC
SBS Chr10 12888743 G-A Homo INTERGENIC
SBS Chr10 23062084 G-A Hetero SYNONYMOUS_CODING
SBS Chr11 3373139 C-A Homo INTRON
SBS Chr11 26730676 C-A Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1145293 1145294 1
Deletion Chr1 1794656 1794659 3 OsKitaake01g021300
Deletion Chr12 2744001 2787000 42999 9
Deletion Chr7 3424450 3424459 9
Deletion Chr4 4590808 4590819 11
Deletion Chr8 11283842 11283849 7
Deletion Chr8 16245693 16245700 7
Deletion Chr9 21424001 21659000 234999 42
Deletion Chr9 21753001 22059000 305999 57
Deletion Chr12 23560021 23560023 2
Deletion Chr11 25317765 25317766 1
Deletion Chr2 28205214 28205216 2
Deletion Chr7 28356879 28356884 5
Deletion Chr7 29390896 29390897 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 9643192 9643195 2
Insertion Chr9 17788069 17788073 3

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 21028755 21423116 OsKitaake09g180600
Inversion Chr4 23756728 23962447
Inversion Chr4 23756732 23962457

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 26011911 Chr5 15100208 OsKitaake12g215300
Translocation Chr12 26011931 Chr5 15097655 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4612657	C-T	Hetero	INTERGENIC
SBS	Chr1	9464265	C-T	Homo	UTR_3_PRIME
SBS	Chr1	23105759	A-T	Hetero	INTERGENIC
SBS	Chr1	30627720	A-T	Hetero	INTERGENIC
SBS	Chr2	6296453	G-A	Hetero	INTRON
SBS	Chr2	33768754	G-T	Homo	INTERGENIC
SBS	Chr3	4478739	A-G	Homo	INTERGENIC
SBS	Chr4	1045856	T-C	Homo	SPLICE_SITE_REGION
SBS	Chr4	16300993	G-A	Hetero	INTERGENIC
SBS	Chr4	23185367	G-A	Hetero	INTERGENIC
SBS	Chr4	28798959	C-A	Hetero	INTERGENIC
SBS	Chr4	29639742	A-G	Hetero	INTERGENIC
SBS	Chr5	8294234	A-T	Homo	INTERGENIC
SBS	Chr5	8294235	A-T	Homo	INTERGENIC
SBS	Chr5	8294236	C-T	Homo	INTERGENIC
SBS	Chr5	14006372	G-A	Hetero	INTERGENIC
SBS	Chr5	19296522	A-G	Hetero	INTERGENIC
SBS	Chr5	21909287	C-G	Homo	INTERGENIC
SBS	Chr5	25651752	G-A	Hetero	INTERGENIC
SBS	Chr6	2569408	C-T	Hetero	INTERGENIC
SBS	Chr7	15056423	A-T	Hetero	INTERGENIC
SBS	Chr7	15647493	G-A	Homo	INTERGENIC
SBS	Chr7	17345965	T-C	Homo	INTERGENIC
SBS	Chr7	18373762	C-G	Homo	INTERGENIC
SBS	Chr8	4103768	G-A	Hetero	INTERGENIC
SBS	Chr8	10666824	T-C	Hetero	INTERGENIC
SBS	Chr8	14528028	C-T	Homo	INTERGENIC
SBS	Chr9	7676572	G-A	Hetero	INTRON
SBS	Chr9	10266573	G-T	Hetero	INTRON
SBS	Chr9	10478315	G-A	Hetero	INTERGENIC
SBS	Chr9	13112104	G-C	Hetero	INTERGENIC
SBS	Chr9	14776303	T-C	Hetero	INTRON
SBS	Chr9	17324339	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g130200
SBS	Chr10	11041317	C-A	Homo	INTERGENIC
SBS	Chr10	12888743	G-A	Homo	INTERGENIC
SBS	Chr10	23062084	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	3373139	C-A	Homo	INTRON
SBS	Chr11	26730676	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1145293	1145294	1
Deletion	Chr1	1794656	1794659	3	OsKitaake01g021300
Deletion	Chr12	2744001	2787000	42999	9
Deletion	Chr7	3424450	3424459	9
Deletion	Chr4	4590808	4590819	11
Deletion	Chr8	11283842	11283849	7
Deletion	Chr8	16245693	16245700	7
Deletion	Chr9	21424001	21659000	234999	42
Deletion	Chr9	21753001	22059000	305999	57
Deletion	Chr12	23560021	23560023	2
Deletion	Chr11	25317765	25317766	1
Deletion	Chr2	28205214	28205216	2
Deletion	Chr7	28356879	28356884	5
Deletion	Chr7	29390896	29390897	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	21028755	21423116	OsKitaake09g180600
Inversion	Chr4	23756728	23962447
Inversion	Chr4	23756732	23962457

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes