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Mutant Information

Mutant Name	FN415-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN415-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1240592 C-T Hetero INTERGENIC
SBS Chr1 2590089 A-G Hetero INTERGENIC
SBS Chr1 20709269 C-T Homo INTERGENIC
SBS Chr1 20709270 A-T Homo INTERGENIC
SBS Chr3 3651813 G-A Hetero INTRON
SBS Chr3 7379723 A-G Hetero INTERGENIC
SBS Chr3 19189815 A-T Hetero INTERGENIC
SBS Chr3 22477001 C-T Hetero INTERGENIC
SBS Chr3 27042679 G-A Hetero INTERGENIC
SBS Chr3 29525986 A-G Hetero UTR_3_PRIME
SBS Chr4 1473884 C-T Homo INTERGENIC
SBS Chr4 10998474 G-A Hetero INTERGENIC
SBS Chr4 13144416 G-A Hetero INTERGENIC
SBS Chr5 14529410 G-A Homo INTERGENIC
SBS Chr5 20689447 G-A Hetero INTERGENIC
SBS Chr7 12215607 T-C Hetero INTERGENIC
SBS Chr7 15479416 C-A Hetero INTERGENIC
SBS Chr7 15881229 G-A Hetero INTERGENIC
SBS Chr8 8970504 G-A Hetero INTERGENIC
SBS Chr8 19604859 T-C Hetero INTERGENIC
SBS Chr8 27980260 G-A Hetero INTRON
SBS Chr11 25274377 A-C Hetero INTERGENIC
SBS Chr12 9170618 A-G Hetero INTERGENIC
SBS Chr12 13310345 T-G Homo INTERGENIC
SBS Chr12 15988517 C-T Homo INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1476917 1476920 3
Deletion Chr12 2473946 2473947 1
Deletion Chr7 4132746 4132761 15
Deletion Chr1 9643192 9643194 2
Deletion Chr4 10450844 10450854 10
Deletion Chr12 15068365 15068366 1
Deletion Chr3 18437034 18437035 1
Deletion Chr11 28572317 28572321 4
Deletion Chr3 29503672 29503673 1
Deletion Chr6 30887260 30887261 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 16618185 16618188 2
Insertion Chr6 12435914 12435917 2
Insertion Chr7 5449144 5449147 2
Insertion Chr12 11688580 11688582 1

Inversions: 8

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 239987 240262 OsKitaake06g001600
Inversion Chr10 781749 782168 OsKitaake10g005000
Inversion Chr9 7599597 7599990
Inversion Chr9 9068825 9069012 OsKitaake09g052900
Inversion Chr1 25539109 25692403 2
Inversion Chr11 26445665 26567714 OsKitaake11g216000
Inversion Chr4 26823992 26824202 OsKitaake04g194100
Inversion Chr7 28378097 28378376 OsKitaake07g269000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1240592	C-T	Hetero	INTERGENIC
SBS	Chr1	2590089	A-G	Hetero	INTERGENIC
SBS	Chr1	20709269	C-T	Homo	INTERGENIC
SBS	Chr1	20709270	A-T	Homo	INTERGENIC
SBS	Chr3	3651813	G-A	Hetero	INTRON
SBS	Chr3	7379723	A-G	Hetero	INTERGENIC
SBS	Chr3	19189815	A-T	Hetero	INTERGENIC
SBS	Chr3	22477001	C-T	Hetero	INTERGENIC
SBS	Chr3	27042679	G-A	Hetero	INTERGENIC
SBS	Chr3	29525986	A-G	Hetero	UTR_3_PRIME
SBS	Chr4	1473884	C-T	Homo	INTERGENIC
SBS	Chr4	10998474	G-A	Hetero	INTERGENIC
SBS	Chr4	13144416	G-A	Hetero	INTERGENIC
SBS	Chr5	14529410	G-A	Homo	INTERGENIC
SBS	Chr5	20689447	G-A	Hetero	INTERGENIC
SBS	Chr7	12215607	T-C	Hetero	INTERGENIC
SBS	Chr7	15479416	C-A	Hetero	INTERGENIC
SBS	Chr7	15881229	G-A	Hetero	INTERGENIC
SBS	Chr8	8970504	G-A	Hetero	INTERGENIC
SBS	Chr8	19604859	T-C	Hetero	INTERGENIC
SBS	Chr8	27980260	G-A	Hetero	INTRON
SBS	Chr11	25274377	A-C	Hetero	INTERGENIC
SBS	Chr12	9170618	A-G	Hetero	INTERGENIC
SBS	Chr12	13310345	T-G	Homo	INTERGENIC
SBS	Chr12	15988517	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1476917	1476920	3
Deletion	Chr12	2473946	2473947	1
Deletion	Chr7	4132746	4132761	15
Deletion	Chr1	9643192	9643194	2
Deletion	Chr4	10450844	10450854	10
Deletion	Chr12	15068365	15068366	1
Deletion	Chr3	18437034	18437035	1
Deletion	Chr11	28572317	28572321	4
Deletion	Chr3	29503672	29503673	1
Deletion	Chr6	30887260	30887261	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	239987	240262	OsKitaake06g001600
Inversion	Chr10	781749	782168	OsKitaake10g005000
Inversion	Chr9	7599597	7599990
Inversion	Chr9	9068825	9069012	OsKitaake09g052900
Inversion	Chr1	25539109	25692403	2
Inversion	Chr11	26445665	26567714	OsKitaake11g216000
Inversion	Chr4	26823992	26824202	OsKitaake04g194100
Inversion	Chr7	28378097	28378376	OsKitaake07g269000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes