Search Kitaake
Mutant Information |
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Mutant Name | FN4150-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4150-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 56
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 11630734 | A-G | Homo | INTERGENIC | |
SBS | Chr1 | 17891675 | C-T | Hetero | INTERGENIC | |
SBS | Chr1 | 35029776 | C-T | Hetero | INTERGENIC | |
SBS | Chr2 | 1273078 | C-T | Homo | INTERGENIC | |
SBS | Chr2 | 15590718 | T-C | Homo | INTRON | |
SBS | Chr2 | 15881291 | C-T | Hetero | INTRON | |
SBS | Chr2 | 21087053 | A-G | Homo | SYNONYMOUS_CODING | |
SBS | Chr3 | 775702 | T-G | Hetero | INTERGENIC | |
SBS | Chr3 | 1242093 | G-A | Hetero | INTERGENIC | |
SBS | Chr3 | 8430252 | G-C | Homo | INTERGENIC | |
SBS | Chr3 | 10641168 | T-A | Hetero | INTERGENIC | |
SBS | Chr3 | 18348772 | C-T | Hetero | INTERGENIC | |
SBS | Chr3 | 32879682 | G-A | Homo | UTR_3_PRIME | |
SBS | Chr4 | 4410427 | G-A | Homo | INTERGENIC | |
SBS | Chr4 | 7772567 | C-T | Hetero | INTERGENIC | |
SBS | Chr4 | 7772568 | C-T | Hetero | INTERGENIC | |
SBS | Chr5 | 782271 | G-A | Hetero | INTERGENIC | |
SBS | Chr5 | 12452100 | G-A | Hetero | INTERGENIC | |
SBS | Chr5 | 18035764 | C-A | Hetero | INTERGENIC | |
SBS | Chr6 | 11781032 | C-A | Hetero | INTERGENIC | |
SBS | Chr6 | 11781034 | T-A | Hetero | INTERGENIC | |
SBS | Chr6 | 12138179 | C-G | Hetero | INTERGENIC | |
SBS | Chr6 | 16434306 | A-T | Hetero | INTERGENIC | |
SBS | Chr6 | 17461826 | C-T | Homo | INTERGENIC | |
SBS | Chr7 | 4462666 | T-C | Homo | INTRON | |
SBS | Chr7 | 7958678 | C-T | Hetero | INTERGENIC | |
SBS | Chr7 | 7958680 | G-T | Hetero | INTERGENIC | |
SBS | Chr7 | 8530499 | C-T | Hetero | INTERGENIC | |
SBS | Chr7 | 10134025 | C-T | Hetero | INTERGENIC | |
SBS | Chr7 | 11883077 | C-A | Hetero | INTERGENIC | |
SBS | Chr7 | 12365178 | G-C | Hetero | INTERGENIC | |
SBS | Chr7 | 13916803 | G-T | Hetero | INTERGENIC | |
SBS | Chr8 | 2198556 | G-T | Hetero | INTERGENIC | |
SBS | Chr8 | 10660505 | G-A | Hetero | INTERGENIC | |
SBS | Chr8 | 20054991 | G-A | Hetero | INTERGENIC | |
SBS | Chr8 | 27475985 | G-A | Hetero | INTERGENIC | |
SBS | Chr9 | 1136640 | G-C | Homo | INTERGENIC | |
SBS | Chr9 | 2871767 | C-A | Homo | INTERGENIC | |
SBS | Chr9 | 5394238 | A-T | Homo | INTRON | |
SBS | Chr9 | 5394686 | A-T | Homo | INTRON | |
SBS | Chr9 | 17047088 | T-C | Homo | SYNONYMOUS_CODING | |
SBS | Chr10 | 1621343 | A-T | Hetero | INTERGENIC | |
SBS | Chr10 | 13307669 | G-A | Hetero | INTERGENIC | |
SBS | Chr10 | 15728220 | G-A | Hetero | INTERGENIC | |
SBS | Chr11 | 10708078 | C-G | Hetero | INTERGENIC | |
SBS | Chr11 | 12848045 | A-T | Hetero | INTERGENIC | |
SBS | Chr11 | 13455219 | G-A | Hetero | INTERGENIC | |
SBS | Chr11 | 13581641 | A-G | Hetero | INTERGENIC | |
SBS | Chr11 | 19621953 | T-A | Homo | INTERGENIC | |
SBS | Chr11 | 20064543 | A-G | Homo | INTERGENIC | |
SBS | Chr11 | 22710213 | G-T | Homo | INTRON | |
SBS | Chr12 | 1420411 | C-T | Hetero | INTERGENIC | |
SBS | Chr12 | 2210679 | G-A | Hetero | INTERGENIC | |
SBS | Chr12 | 4509404 | A-T | Hetero | INTERGENIC | |
SBS | Chr12 | 22606592 | G-A | Hetero | INTERGENIC | |
SBS | Chr12 | 24149882 | T-G | Homo | INTERGENIC |
Deletions: 23
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr1 | 1247873 | 1247885 | 12 | |
Deletion | Chr10 | 1560001 | 1601000 | 40999 | 5 |
Deletion | Chr10 | 1958104 | 1958109 | 5 | |
Deletion | Chr12 | 2027349 | 2027354 | 5 | |
Deletion | Chr3 | 2032806 | 2032823 | 17 | |
Deletion | Chr12 | 2091266 | 2091272 | 6 | |
Deletion | Chr5 | 2187622 | 2187623 | 1 | OsKitaake05g024700 |
Deletion | Chr7 | 2214197 | 2214198 | 1 | |
Deletion | Chr10 | 2647001 | 2669000 | 21999 | 5 |
Deletion | Chr3 | 9331054 | 9331070 | 16 | OsKitaake03g126800 |
Deletion | Chr12 | 9806502 | 9806513 | 11 | |
Deletion | Chr4 | 11368617 | 11368618 | 1 | |
Deletion | Chr2 | 11457166 | 11457183 | 17 | |
Deletion | Chr10 | 13308800 | 13308811 | 11 | |
Deletion | Chr4 | 15254159 | 15254164 | 5 | |
Deletion | Chr8 | 16396339 | 16396340 | 1 | |
Deletion | Chr4 | 18240869 | 18240873 | 4 | |
Deletion | Chr2 | 18458606 | 18458608 | 2 | OsKitaake02g183000 |
Deletion | Chr6 | 19943052 | 19943055 | 3 | |
Deletion | Chr6 | 22282460 | 22282465 | 5 | |
Deletion | Chr7 | 28748956 | 28748957 | 1 | OsKitaake07g274300 |
Deletion | Chr3 | 30683043 | 30683044 | 1 | |
Deletion | Chr4 | 35841611 | 35841617 | 6 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Insertion | Chr4 | 1825659 | 1825662 | 2 | |
Insertion | Chr5 | 20142344 | 20142347 | 2 | |
Insertion | Chr7 | 20394494 | 20394497 | 2 | |
Insertion | Chr8 | 24752105 | 24752108 | 2 | OsKitaake08g193300 ![]() |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr2 | 5744766 | 6204552 | |
Inversion | Chr9 | 6155628 | 6422997 | |
Inversion | Chr9 | 6155638 | 6423003 | |
Inversion | Chr2 | 6204556 | 6513627 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
Translocation | Chr8 | 25710728 | Chr3 | 14414144 | OsKitaake08g203700 |
Translocation | Chr8 | 25711045 | Chr3 | 14414153 | OsKitaake08g203700 |