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Mutant Information

Mutant Name	FN4151-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4151-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1821740 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g021800
SBS Chr1 3858470 G-T Hetero INTERGENIC
SBS Chr1 13326322 C-T Hetero INTERGENIC
SBS Chr1 29616910 C-T Hetero INTERGENIC
SBS Chr1 33778648 T-A Homo INTERGENIC
SBS Chr1 43178948 T-A Homo INTERGENIC
SBS Chr2 18614932 C-T Hetero INTERGENIC
SBS Chr2 26332105 C-G Hetero INTERGENIC
SBS Chr3 1099764 C-A Hetero INTRON
SBS Chr3 20522902 C-T Homo INTERGENIC
SBS Chr3 27019177 G-T Hetero INTERGENIC
SBS Chr3 27693704 T-A Hetero INTERGENIC
SBS Chr3 33017294 G-A Hetero INTERGENIC
SBS Chr3 33644917 A-T Hetero INTERGENIC
SBS Chr3 34076248 C-T Hetero INTERGENIC
SBS Chr3 37588777 A-G Homo NON_SYNONYMOUS_CODING OsKitaake03g422100
SBS Chr4 1190216 G-T Hetero INTERGENIC
SBS Chr4 2979886 C-G Hetero INTERGENIC
SBS Chr4 9405647 G-A Hetero INTERGENIC
SBS Chr4 14764628 A-G Hetero INTERGENIC
SBS Chr5 136598 C-A Hetero INTERGENIC
SBS Chr5 12300266 C-A Homo INTERGENIC
SBS Chr5 19155701 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g149900
SBS Chr5 19155709 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g149900
SBS Chr5 20630457 G-A Hetero UTR_3_PRIME
SBS Chr5 22218537 C-A Hetero INTERGENIC
SBS Chr6 1523070 A-G Homo NON_SYNONYMOUS_CODING OsKitaake06g017800
SBS Chr8 18374295 G-A Homo INTERGENIC
SBS Chr8 23167398 C-T Homo INTERGENIC
SBS Chr8 23193673 G-A Homo INTERGENIC
SBS Chr9 1587860 G-T Homo INTERGENIC
SBS Chr9 3552978 A-G Homo INTERGENIC
SBS Chr9 21156985 A-T Hetero INTERGENIC
SBS Chr10 8535559 G-A Hetero INTERGENIC
SBS Chr11 1848542 G-T Hetero INTERGENIC
SBS Chr11 2039643 A-T Hetero INTRON
SBS Chr11 2258186 G-A Hetero INTERGENIC
SBS Chr11 9898860 C-T Hetero INTERGENIC
SBS Chr11 27908782 C-A Hetero INTERGENIC
SBS Chr12 10406746 C-T Hetero INTERGENIC
SBS Chr12 10944191 C-T Hetero INTRON

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 52182 52184 2
Deletion Chr5 201379 201383 4
Deletion Chr7 1199252 1199253 1
Deletion Chr5 1512931 1512937 6
Deletion Chr9 1587102 1587107 5
Deletion Chr2 2108145 2108150 5
Deletion Chr4 2505832 2505838 6
Deletion Chr1 6195493 6195494 1
Deletion Chr11 7607038 7607043 5
Deletion Chr3 8079188 8079195 7 OsKitaake03g112000
Deletion Chr12 11231419 11231429 10
Deletion Chr8 13252640 13252644 4
Deletion Chr3 14178284 14178289 5
Deletion Chr2 19260179 19260180 1
Deletion Chr2 19843307 19843308 1
Deletion Chr5 20760743 20760748 5
Deletion Chr7 22877968 22877978 10
Deletion Chr4 23777041 23777046 5 OsKitaake04g150400
Deletion Chr7 26143661 26143672 11
Deletion Chr12 26911410 26911415 5
Deletion Chr1 32199294 32199300 6

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 1084516 1084518 1
Insertion Chr7 23307221 23307224 2 OsKitaake07g203100
Insertion Chr8 9052760 9052763 2
Insertion Chr11 15895417 15895420 2
Insertion Chr12 24965333 24965336 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 5080246 5148665
Inversion Chr9 5080249 5148664
Inversion Chr12 8510790 9322570
Inversion Chr12 9322580 9985681
Inversion Chr8 10022602 11002752
Inversion Chr8 10022606 11002760

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 3388898 Chr2 27555130
Translocation Chr8 3390315 Chr2 27555138

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1821740	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g021800
SBS	Chr1	3858470	G-T	Hetero	INTERGENIC
SBS	Chr1	13326322	C-T	Hetero	INTERGENIC
SBS	Chr1	29616910	C-T	Hetero	INTERGENIC
SBS	Chr1	33778648	T-A	Homo	INTERGENIC
SBS	Chr1	43178948	T-A	Homo	INTERGENIC
SBS	Chr2	18614932	C-T	Hetero	INTERGENIC
SBS	Chr2	26332105	C-G	Hetero	INTERGENIC
SBS	Chr3	1099764	C-A	Hetero	INTRON
SBS	Chr3	20522902	C-T	Homo	INTERGENIC
SBS	Chr3	27019177	G-T	Hetero	INTERGENIC
SBS	Chr3	27693704	T-A	Hetero	INTERGENIC
SBS	Chr3	33017294	G-A	Hetero	INTERGENIC
SBS	Chr3	33644917	A-T	Hetero	INTERGENIC
SBS	Chr3	34076248	C-T	Hetero	INTERGENIC
SBS	Chr3	37588777	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g422100
SBS	Chr4	1190216	G-T	Hetero	INTERGENIC
SBS	Chr4	2979886	C-G	Hetero	INTERGENIC
SBS	Chr4	9405647	G-A	Hetero	INTERGENIC
SBS	Chr4	14764628	A-G	Hetero	INTERGENIC
SBS	Chr5	136598	C-A	Hetero	INTERGENIC
SBS	Chr5	12300266	C-A	Homo	INTERGENIC
SBS	Chr5	19155701	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g149900
SBS	Chr5	19155709	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g149900
SBS	Chr5	20630457	G-A	Hetero	UTR_3_PRIME
SBS	Chr5	22218537	C-A	Hetero	INTERGENIC
SBS	Chr6	1523070	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g017800
SBS	Chr8	18374295	G-A	Homo	INTERGENIC
SBS	Chr8	23167398	C-T	Homo	INTERGENIC
SBS	Chr8	23193673	G-A	Homo	INTERGENIC
SBS	Chr9	1587860	G-T	Homo	INTERGENIC
SBS	Chr9	3552978	A-G	Homo	INTERGENIC
SBS	Chr9	21156985	A-T	Hetero	INTERGENIC
SBS	Chr10	8535559	G-A	Hetero	INTERGENIC
SBS	Chr11	1848542	G-T	Hetero	INTERGENIC
SBS	Chr11	2039643	A-T	Hetero	INTRON
SBS	Chr11	2258186	G-A	Hetero	INTERGENIC
SBS	Chr11	9898860	C-T	Hetero	INTERGENIC
SBS	Chr11	27908782	C-A	Hetero	INTERGENIC
SBS	Chr12	10406746	C-T	Hetero	INTERGENIC
SBS	Chr12	10944191	C-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	52182	52184	2
Deletion	Chr5	201379	201383	4
Deletion	Chr7	1199252	1199253	1
Deletion	Chr5	1512931	1512937	6
Deletion	Chr9	1587102	1587107	5
Deletion	Chr2	2108145	2108150	5
Deletion	Chr4	2505832	2505838	6
Deletion	Chr1	6195493	6195494	1
Deletion	Chr11	7607038	7607043	5
Deletion	Chr3	8079188	8079195	7	OsKitaake03g112000
Deletion	Chr12	11231419	11231429	10
Deletion	Chr8	13252640	13252644	4
Deletion	Chr3	14178284	14178289	5
Deletion	Chr2	19260179	19260180	1
Deletion	Chr2	19843307	19843308	1
Deletion	Chr5	20760743	20760748	5
Deletion	Chr7	22877968	22877978	10
Deletion	Chr4	23777041	23777046	5	OsKitaake04g150400
Deletion	Chr7	26143661	26143672	11
Deletion	Chr12	26911410	26911415	5
Deletion	Chr1	32199294	32199300	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	5080246	5148665
Inversion	Chr9	5080249	5148664
Inversion	Chr12	8510790	9322570
Inversion	Chr12	9322580	9985681
Inversion	Chr8	10022602	11002752
Inversion	Chr8	10022606	11002760

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes