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| Mutant Information |
|---|
| Mutant Name | FN4152-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4152-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 23
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr2 | 16662917 | T-C | Hetero | INTRON | |
| SBS | Chr2 | 30749228 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr3 | 14188514 | T-C | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 21948974 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 24790693 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 31220221 | C-A | Homo | INTERGENIC | |
| SBS | Chr3 | 31220222 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 830099 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 2370083 | C-T | Homo | INTRON | |
| SBS | Chr4 | 2739379 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 6516736 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g033000 |
| SBS | Chr4 | 12768962 | A-C | Homo | INTRON | |
| SBS | Chr4 | 13820481 | C-T | Homo | INTRON | |
| SBS | Chr5 | 3199798 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr5 | 5174152 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 18877432 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 15321446 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 17153932 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g160300 |
| SBS | Chr7 | 13459901 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 14467499 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 5789678 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 11581235 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 12420959 | C-A | Hetero | INTERGENIC |
Deletions: 20
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 1290259 | 1290268 | 9 | |
| Deletion | Chr5 | 3442804 | 3442805 | 1 | |
| Deletion | Chr3 | 4042947 | 4042966 | 19 | |
| Deletion | Chr10 | 6473638 | 6473649 | 11 | |
| Deletion | Chr5 | 6542438 | 6542440 | 2 | |
| Deletion | Chr9 | 7269821 | 7269823 | 2 | |
| Deletion | Chr11 | 8595674 | 8595675 | 1 | |
| Deletion | Chr10 | 9407642 | 9407644 | 2 | |
| Deletion | Chr2 | 10148483 | 10148486 | 3 | |
| Deletion | Chr6 | 15924339 | 15924340 | 1 | |
| Deletion | Chr6 | 19072052 | 19072053 | 1 | |
| Deletion | Chr2 | 20227602 | 20227603 | 1 | |
| Deletion | Chr12 | 21317558 | 21317567 | 9 | |
| Deletion | Chr11 | 25120001 | 25429000 | 308999 | 32 |
| Deletion | Chr6 | 26572066 | 26572067 | 1 | |
| Deletion | Chr2 | 27259561 | 27259565 | 4 | |
| Deletion | Chr3 | 29767499 | 29767508 | 9 | |
| Deletion | Chr1 | 29858160 | 29858161 | 1 | |
| Deletion | Chr5 | 30171178 | 30171179 | 1 | |
| Deletion | Chr2 | 30747784 | 30747787 | 3 | OsKitaake02g303600 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 13053394 | 13053402 | 7 | |
| Insertion | Chr9 | 17574927 | 17574929 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 4613685 | 4827587 | OsKitaake05g053900 |
| Inversion | Chr5 | 4613691 | 4827626 | OsKitaake05g053900 |