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| Mutant Information |
|---|
| Mutant Name | FN4153-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4153-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 10281601 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 22127610 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 3306066 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 19139671 | G-T | Homo | INTERGENIC | |
| SBS | Chr3 | 21485440 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 18674546 | A-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g093400 |
| SBS | Chr5 | 4037699 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g048700 |
| SBS | Chr5 | 16582808 | G-T | Hetero | INTRON | |
| SBS | Chr5 | 21914915 | C-A | Homo | INTERGENIC | |
| SBS | Chr6 | 11800130 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 19480616 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 19570218 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 27808177 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 29357556 | T-A | Hetero | INTRON | |
| SBS | Chr6 | 29357557 | G-C | Hetero | INTRON | |
| SBS | Chr7 | 14540468 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 17856069 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 22846830 | C-A | Hetero | INTRON | |
| SBS | Chr8 | 26673722 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 26673725 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 5329912 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 7796051 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 10402991 | C-T | Hetero | INTRON | |
| SBS | Chr9 | 17970565 | T-G | Homo | INTERGENIC | |
| SBS | Chr10 | 19518631 | A-G | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr11 | 17066483 | C-T | Homo | INTRON | |
| SBS | Chr11 | 26311826 | C-T | Hetero | INTRON | |
| SBS | Chr11 | 29311495 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 2093591 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 7736687 | C-T | Hetero | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 10928553 | 10928558 | 5 | |
| Deletion | Chr10 | 13890704 | 13890719 | 15 | |
| Deletion | Chr11 | 15928611 | 15928615 | 4 | |
| Deletion | Chr7 | 17803610 | 17803684 | 74 | |
| Deletion | Chr5 | 18049849 | 18049850 | 1 | OsKitaake05g140400 |
| Deletion | Chr3 | 18736353 | 18736356 | 3 | |
| Deletion | Chr7 | 26334744 | 26334748 | 4 | |
| Deletion | Chr11 | 29318363 | 29318454 | 91 | |
| Deletion | Chr6 | 29796665 | 29796667 | 2 | |
| Deletion | Chr2 | 33741374 | 33741380 | 6 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 7483059 | 7483063 | 3 | |
| Insertion | Chr5 | 16987625 | 16987628 | 2 | |
| Insertion | Chr8 | 12883947 | 12883950 | 2 | |
| Insertion | Chr5 | 12424107 | 12424109 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 157044 | 517148 | |
| Inversion | Chr10 | 157076 | 517180 |