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Mutant Information

Mutant Name	FN4154-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4154-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1146141 C-A Homo INTERGENIC
SBS Chr1 1217904 T-C Homo UTR_5_PRIME
SBS Chr1 6317043 C-G Hetero INTERGENIC
SBS Chr2 21136998 T-G Hetero INTERGENIC
SBS Chr2 27303927 G-A Hetero INTERGENIC
SBS Chr2 27536717 C-T Hetero INTRON
SBS Chr3 34989539 G-A Homo INTRON
SBS Chr4 11944139 C-T Hetero INTERGENIC
SBS Chr4 15245242 G-A Hetero INTERGENIC
SBS Chr4 32072065 G-A Homo INTERGENIC
SBS Chr6 17432249 C-T Hetero UTR_3_PRIME
SBS Chr6 17779309 G-A Hetero INTERGENIC
SBS Chr6 23975457 G-A Homo INTERGENIC
SBS Chr7 27689010 G-T Hetero INTRON
SBS Chr8 17102179 C-T Hetero INTERGENIC
SBS Chr9 2308701 C-T Hetero INTERGENIC
SBS Chr9 8992788 T-A Hetero INTERGENIC
SBS Chr9 8992789 T-C Hetero INTERGENIC
SBS Chr9 9430381 C-T Hetero INTERGENIC
SBS Chr9 14437265 C-A Homo INTERGENIC
SBS Chr9 19044984 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g152800
SBS Chr10 4393446 G-A Hetero INTERGENIC
SBS Chr10 4740054 T-C Hetero INTERGENIC
SBS Chr10 18901926 T-A Hetero SPLICE_SITE_REGION
SBS Chr11 11959982 C-T Hetero INTERGENIC
SBS Chr11 26369987 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g213600
SBS Chr12 18369529 G-T Homo INTERGENIC
SBS Chr12 22565659 G-A Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 20692 21044 352
Deletion Chr3 4115108 4115111 3
Deletion Chr12 7161988 7161997 9
Deletion Chr9 10130701 10130711 10
Deletion Chr11 11478952 11478964 12
Deletion Chr9 11569870 11569878 8
Deletion Chr12 17380618 17380627 9
Deletion Chr1 23969346 23969362 16
Deletion Chr1 24774247 24774256 9
Deletion Chr11 26226315 26226325 10 OsKitaake11g211700

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 10699739 10699742 2
Insertion Chr6 3532757 3532760 2
Insertion Chr6 6313680 6313685 4
Insertion Chr9 18628194 18628197 2
Insertion Chr5 12633210 12633212 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1146141	C-A	Homo	INTERGENIC
SBS	Chr1	1217904	T-C	Homo	UTR_5_PRIME
SBS	Chr1	6317043	C-G	Hetero	INTERGENIC
SBS	Chr2	21136998	T-G	Hetero	INTERGENIC
SBS	Chr2	27303927	G-A	Hetero	INTERGENIC
SBS	Chr2	27536717	C-T	Hetero	INTRON
SBS	Chr3	34989539	G-A	Homo	INTRON
SBS	Chr4	11944139	C-T	Hetero	INTERGENIC
SBS	Chr4	15245242	G-A	Hetero	INTERGENIC
SBS	Chr4	32072065	G-A	Homo	INTERGENIC
SBS	Chr6	17432249	C-T	Hetero	UTR_3_PRIME
SBS	Chr6	17779309	G-A	Hetero	INTERGENIC
SBS	Chr6	23975457	G-A	Homo	INTERGENIC
SBS	Chr7	27689010	G-T	Hetero	INTRON
SBS	Chr8	17102179	C-T	Hetero	INTERGENIC
SBS	Chr9	2308701	C-T	Hetero	INTERGENIC
SBS	Chr9	8992788	T-A	Hetero	INTERGENIC
SBS	Chr9	8992789	T-C	Hetero	INTERGENIC
SBS	Chr9	9430381	C-T	Hetero	INTERGENIC
SBS	Chr9	14437265	C-A	Homo	INTERGENIC
SBS	Chr9	19044984	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g152800
SBS	Chr10	4393446	G-A	Hetero	INTERGENIC
SBS	Chr10	4740054	T-C	Hetero	INTERGENIC
SBS	Chr10	18901926	T-A	Hetero	SPLICE_SITE_REGION
SBS	Chr11	11959982	C-T	Hetero	INTERGENIC
SBS	Chr11	26369987	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g213600
SBS	Chr12	18369529	G-T	Homo	INTERGENIC
SBS	Chr12	22565659	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	20692	21044	352
Deletion	Chr3	4115108	4115111	3
Deletion	Chr12	7161988	7161997	9
Deletion	Chr9	10130701	10130711	10
Deletion	Chr11	11478952	11478964	12
Deletion	Chr9	11569870	11569878	8
Deletion	Chr12	17380618	17380627	9
Deletion	Chr1	23969346	23969362	16
Deletion	Chr1	24774247	24774256	9
Deletion	Chr11	26226315	26226325	10	OsKitaake11g211700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes