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Mutant Information

Mutant Name	FN4155-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4155-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 31315777 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g313700
SBS Chr1 31315778 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 40592965 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g441000
SBS Chr2 2632175 G-A Hetero INTRON
SBS Chr2 2632176 G-A Hetero INTRON
SBS Chr2 2632177 C-A Hetero INTRON
SBS Chr2 9550531 T-A Hetero INTERGENIC
SBS Chr3 19290591 C-T Hetero INTERGENIC
SBS Chr3 20604980 G-A Homo INTERGENIC
SBS Chr3 30525154 A-G Hetero INTRON
SBS Chr5 2950441 C-G Homo INTERGENIC
SBS Chr5 12199379 G-A Homo INTERGENIC
SBS Chr6 17988164 A-G Hetero INTRON
SBS Chr7 16117559 C-A Hetero INTERGENIC
SBS Chr7 27723919 G-A Homo INTERGENIC
SBS Chr8 6554421 T-G Homo INTERGENIC
SBS Chr8 19322961 C-G Homo INTERGENIC
SBS Chr9 3595508 C-A Hetero INTERGENIC
SBS Chr9 7458668 C-T Hetero INTERGENIC
SBS Chr9 14801427 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g101300
SBS Chr9 18074250 C-T Hetero INTERGENIC
SBS Chr10 3074328 T-C Hetero INTERGENIC
SBS Chr10 3415689 T-C Hetero INTERGENIC
SBS Chr10 12668596 G-C Hetero INTERGENIC
SBS Chr11 7429001 C-A Hetero INTERGENIC
SBS Chr11 16385064 G-A Hetero INTERGENIC
SBS Chr12 5090933 G-C Homo NON_SYNONYMOUS_CODING OsKitaake12g064600
SBS Chr12 15974330 T-C Hetero INTERGENIC
SBS Chr12 27055543 G-A Homo INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 276344 276355 11 OsKitaake08g003800
Deletion Chr9 1187949 1187951 2
Deletion Chr5 5489355 5489356 1 OsKitaake05g059401
Deletion Chr5 5707384 5707390 6
Deletion Chr4 8074668 8074675 7
Deletion Chr1 9613040 9613043 3
Deletion Chr2 10155284 10155285 1 OsKitaake02g121901
Deletion Chr12 10851028 10851050 22
Deletion Chr1 11099587 11099612 25
Deletion Chr9 13299588 13299589 1
Deletion Chr9 14382557 14382564 7
Deletion Chr6 14741791 14741794 3
Deletion Chr11 16358754 16358759 5
Deletion Chr10 21392137 21392138 1
Deletion Chr1 23584421 23584423 2
Deletion Chr7 27563224 27563232 8
Deletion Chr4 30434806 30434807 1
Deletion Chr4 31847386 31847392 6

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 29416178 29416181 2
Insertion Chr8 9165900 9165903 2
Insertion Chr11 27705895 27705897 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 21680366 21722864 OsKitaake04g123400
Inversion Chr3 29252845 30226090
Inversion Chr3 29252862 30226099
Inversion Chr1 31411607 31482515 2
Inversion Chr1 31411611 31482519 2

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 9915582 Chr2 9540254
Translocation Chr4 21680254 Chr2 9561076 OsKitaake04g123400
Translocation Chr12 26806628 Chr11 15083634 OsKitaake11g123500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31315777	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g313700
SBS	Chr1	31315778	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	40592965	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g441000
SBS	Chr2	2632175	G-A	Hetero	INTRON
SBS	Chr2	2632176	G-A	Hetero	INTRON
SBS	Chr2	2632177	C-A	Hetero	INTRON
SBS	Chr2	9550531	T-A	Hetero	INTERGENIC
SBS	Chr3	19290591	C-T	Hetero	INTERGENIC
SBS	Chr3	20604980	G-A	Homo	INTERGENIC
SBS	Chr3	30525154	A-G	Hetero	INTRON
SBS	Chr5	2950441	C-G	Homo	INTERGENIC
SBS	Chr5	12199379	G-A	Homo	INTERGENIC
SBS	Chr6	17988164	A-G	Hetero	INTRON
SBS	Chr7	16117559	C-A	Hetero	INTERGENIC
SBS	Chr7	27723919	G-A	Homo	INTERGENIC
SBS	Chr8	6554421	T-G	Homo	INTERGENIC
SBS	Chr8	19322961	C-G	Homo	INTERGENIC
SBS	Chr9	3595508	C-A	Hetero	INTERGENIC
SBS	Chr9	7458668	C-T	Hetero	INTERGENIC
SBS	Chr9	14801427	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g101300
SBS	Chr9	18074250	C-T	Hetero	INTERGENIC
SBS	Chr10	3074328	T-C	Hetero	INTERGENIC
SBS	Chr10	3415689	T-C	Hetero	INTERGENIC
SBS	Chr10	12668596	G-C	Hetero	INTERGENIC
SBS	Chr11	7429001	C-A	Hetero	INTERGENIC
SBS	Chr11	16385064	G-A	Hetero	INTERGENIC
SBS	Chr12	5090933	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g064600
SBS	Chr12	15974330	T-C	Hetero	INTERGENIC
SBS	Chr12	27055543	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	276344	276355	11	OsKitaake08g003800
Deletion	Chr9	1187949	1187951	2
Deletion	Chr5	5489355	5489356	1	OsKitaake05g059401
Deletion	Chr5	5707384	5707390	6
Deletion	Chr4	8074668	8074675	7
Deletion	Chr1	9613040	9613043	3
Deletion	Chr2	10155284	10155285	1	OsKitaake02g121901
Deletion	Chr12	10851028	10851050	22
Deletion	Chr1	11099587	11099612	25
Deletion	Chr9	13299588	13299589	1
Deletion	Chr9	14382557	14382564	7
Deletion	Chr6	14741791	14741794	3
Deletion	Chr11	16358754	16358759	5
Deletion	Chr10	21392137	21392138	1
Deletion	Chr1	23584421	23584423	2
Deletion	Chr7	27563224	27563232	8
Deletion	Chr4	30434806	30434807	1
Deletion	Chr4	31847386	31847392	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	21680366	21722864	OsKitaake04g123400
Inversion	Chr3	29252845	30226090
Inversion	Chr3	29252862	30226099
Inversion	Chr1	31411607	31482515	2
Inversion	Chr1	31411611	31482519	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes