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Mutant Information

Mutant Name	FN4156-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4156-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 22145772 T-C Homo INTERGENIC
SBS Chr2 20549507 C-A Hetero INTERGENIC
SBS Chr2 28255013 G-C Hetero INTERGENIC
SBS Chr2 29883170 G-A Hetero INTERGENIC
SBS Chr3 6237451 A-G Hetero INTERGENIC
SBS Chr3 16443733 A-G Hetero INTERGENIC
SBS Chr3 33150511 T-C Hetero INTERGENIC
SBS Chr4 14267525 C-T Hetero INTERGENIC
SBS Chr4 22791796 G-A Hetero INTERGENIC
SBS Chr4 30839757 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g239000
SBS Chr5 20916175 C-T Hetero INTERGENIC
SBS Chr7 366746 A-G Hetero INTRON
SBS Chr7 2649155 A-G Hetero INTERGENIC
SBS Chr8 8347493 T-C Hetero INTERGENIC
SBS Chr8 24392784 G-A Homo INTERGENIC
SBS Chr9 8154201 C-T Hetero INTERGENIC
SBS Chr9 17461158 G-T Homo INTERGENIC
SBS Chr9 21788465 T-C Homo INTERGENIC
SBS Chr10 19485058 G-C Homo INTERGENIC
SBS Chr10 21902503 G-A Homo INTERGENIC
SBS Chr11 8555938 G-A Homo INTERGENIC
SBS Chr11 11971517 G-T Homo INTERGENIC
SBS Chr11 19980920 T-A Hetero INTERGENIC
SBS Chr11 25830930 G-T Hetero INTERGENIC
SBS Chr12 15354373 A-G Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 4053688 4054009 321
Deletion Chr3 5118082 5118333 251
Deletion Chr2 6916835 6916836 1
Deletion Chr11 10757471 10757503 32
Deletion Chr2 10988372 10988375 3
Deletion Chr11 11605807 11605810 3
Deletion Chr7 12340679 12340680 1
Deletion Chr2 13084172 13084175 3
Deletion Chr12 14229925 14229942 17
Deletion Chr8 14234747 14234752 5
Deletion Chr2 18228708 18228709 1
Deletion Chr11 28176012 28176013 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 31479123 31479126 2
Insertion Chr3 22766156 22766159 2
Insertion Chr6 7793675 7793678 2
Insertion Chr7 14956639 14956641 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 16062184 16324847 2
Inversion Chr5 16063739 16324859 OsKitaake05g124900

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 7867822 Chr5 16063739 OsKitaake09g044700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22145772	T-C	Homo	INTERGENIC
SBS	Chr2	20549507	C-A	Hetero	INTERGENIC
SBS	Chr2	28255013	G-C	Hetero	INTERGENIC
SBS	Chr2	29883170	G-A	Hetero	INTERGENIC
SBS	Chr3	6237451	A-G	Hetero	INTERGENIC
SBS	Chr3	16443733	A-G	Hetero	INTERGENIC
SBS	Chr3	33150511	T-C	Hetero	INTERGENIC
SBS	Chr4	14267525	C-T	Hetero	INTERGENIC
SBS	Chr4	22791796	G-A	Hetero	INTERGENIC
SBS	Chr4	30839757	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g239000
SBS	Chr5	20916175	C-T	Hetero	INTERGENIC
SBS	Chr7	366746	A-G	Hetero	INTRON
SBS	Chr7	2649155	A-G	Hetero	INTERGENIC
SBS	Chr8	8347493	T-C	Hetero	INTERGENIC
SBS	Chr8	24392784	G-A	Homo	INTERGENIC
SBS	Chr9	8154201	C-T	Hetero	INTERGENIC
SBS	Chr9	17461158	G-T	Homo	INTERGENIC
SBS	Chr9	21788465	T-C	Homo	INTERGENIC
SBS	Chr10	19485058	G-C	Homo	INTERGENIC
SBS	Chr10	21902503	G-A	Homo	INTERGENIC
SBS	Chr11	8555938	G-A	Homo	INTERGENIC
SBS	Chr11	11971517	G-T	Homo	INTERGENIC
SBS	Chr11	19980920	T-A	Hetero	INTERGENIC
SBS	Chr11	25830930	G-T	Hetero	INTERGENIC
SBS	Chr12	15354373	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	4053688	4054009	321
Deletion	Chr3	5118082	5118333	251
Deletion	Chr2	6916835	6916836	1
Deletion	Chr11	10757471	10757503	32
Deletion	Chr2	10988372	10988375	3
Deletion	Chr11	11605807	11605810	3
Deletion	Chr7	12340679	12340680	1
Deletion	Chr2	13084172	13084175	3
Deletion	Chr12	14229925	14229942	17
Deletion	Chr8	14234747	14234752	5
Deletion	Chr2	18228708	18228709	1
Deletion	Chr11	28176012	28176013	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	16062184	16324847	2
Inversion	Chr5	16063739	16324859	OsKitaake05g124900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes