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| Mutant Information |
|---|
| Mutant Name | FN4158-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4158-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 12991379 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 15250535 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 19519670 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 19519671 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 9289220 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 18516310 | A-T | Homo | INTERGENIC | |
| SBS | Chr2 | 32591329 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g333100 |
| SBS | Chr3 | 7162575 | C-T | Hetero | UTR_5_PRIME | |
| SBS | Chr3 | 17604817 | G-C | Homo | INTERGENIC | |
| SBS | Chr4 | 8437223 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 13754586 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 20681807 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 31888970 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 18791730 | C-A | Hetero | INTRON | |
| SBS | Chr7 | 36435 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 4531013 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 7495833 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 9585279 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 10316742 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 19883371 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 96415 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 11089007 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 16527681 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 2077923 | T-A | Hetero | SPLICE_SITE_REGION | |
| SBS | Chr11 | 3062435 | G-T | Hetero | INTRON | |
| SBS | Chr11 | 19284086 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 1217527 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 8563495 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 23879080 | G-C | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 1112278 | 1112280 | 2 | |
| Deletion | Chr3 | 6938364 | 6938366 | 2 | |
| Deletion | Chr6 | 10264890 | 10264898 | 8 | |
| Deletion | Chr5 | 16300603 | 16300607 | 4 | |
| Deletion | Chr10 | 16460921 | 16460926 | 5 | |
| Deletion | Chr11 | 20374001 | 20391000 | 16999 | OsKitaake11g159400 |
| Deletion | Chr4 | 25874309 | 25874321 | 12 | |
| Deletion | Chr11 | 26477727 | 26477732 | 5 | |
| Deletion | Chr7 | 26720208 | 26720223 | 15 | |
| Deletion | Chr6 | 30428173 | 30428174 | 1 | OsKitaake06g286000 |
| Deletion | Chr3 | 32903004 | 32903031 | 27 | OsKitaake03g349700 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 324173 | 324178 | 4 | |
| Insertion | Chr12 | 24664892 | 24664895 | 2 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 14164164 | 14517850 | |
| Inversion | Chr4 | 14164169 | 14517850 | |
| Inversion | Chr11 | 20392881 | 20598079 | OsKitaake11g159400 |