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Mutant Information

Mutant Name	FN416-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN416-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9080670 A-T Hetero INTERGENIC
SBS Chr1 14583272 G-C Hetero UTR_3_PRIME
SBS Chr1 35867507 A-C Hetero INTERGENIC
SBS Chr2 9516339 T-A Hetero INTERGENIC
SBS Chr2 27825502 G-A Hetero INTERGENIC
SBS Chr2 34906442 G-T Hetero INTERGENIC
SBS Chr3 1720026 G-A Hetero UTR_3_PRIME
SBS Chr3 11268629 C-T Hetero INTERGENIC
SBS Chr3 21336203 C-T Homo INTERGENIC
SBS Chr4 36595606 A-G Hetero UTR_3_PRIME
SBS Chr5 1146548 G-A Hetero INTERGENIC
SBS Chr5 16838237 A-G Hetero INTERGENIC
SBS Chr5 16838238 A-G Hetero INTERGENIC
SBS Chr5 29816348 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g285300
SBS Chr6 2004599 A-G Hetero INTERGENIC
SBS Chr6 4701066 T-C Hetero INTERGENIC
SBS Chr6 13135879 C-T Hetero INTERGENIC
SBS Chr6 13157926 C-T Hetero INTERGENIC
SBS Chr6 26656542 C-A Hetero INTERGENIC
SBS Chr7 7765173 G-A Hetero INTERGENIC
SBS Chr7 24622969 C-T Hetero INTERGENIC
SBS Chr7 28197847 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake07g266100
SBS Chr7 29109638 G-A Hetero INTERGENIC
SBS Chr8 18297317 G-C Hetero INTERGENIC
SBS Chr8 27238973 C-T Homo INTERGENIC
SBS Chr9 7394129 T-C Hetero INTRON
SBS Chr9 9274271 A-C Hetero INTERGENIC
SBS Chr9 9294149 G-A Hetero INTERGENIC
SBS Chr9 9760604 G-A Hetero INTRON
SBS Chr9 12500763 T-G Hetero INTERGENIC
SBS Chr9 15104584 C-T Hetero SYNONYMOUS_CODING
SBS Chr9 16153880 C-T Hetero INTERGENIC
SBS Chr9 21759144 C-T Hetero INTERGENIC
SBS Chr10 7926 T-G Hetero INTERGENIC
SBS Chr10 2007663 C-T Hetero INTERGENIC
SBS Chr10 3506158 A-T Hetero INTRON
SBS Chr11 8318822 T-C Hetero INTERGENIC
SBS Chr11 20146489 A-C Hetero INTERGENIC
SBS Chr11 28612516 T-A Hetero INTERGENIC
SBS Chr11 28775184 A-G Hetero INTERGENIC
SBS Chr12 710030 G-A Hetero INTRON
SBS Chr12 20313098 A-T Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 728429 728496 67
Deletion Chr8 3422377 3422382 5 OsKitaake08g038300
Deletion Chr9 6686003 6686105 102
Deletion Chr9 7681598 7681708 110
Deletion Chr6 7900236 7900252 16
Deletion Chr1 9579084 9579085 1 OsKitaake01g122600
Deletion Chr5 16218001 16239000 20999 2
Deletion Chr10 18887001 19019000 131999 15
Deletion Chr1 20644975 20644984 9
Deletion Chr3 22370078 22370089 11
Deletion Chr1 25820175 25820178 3
Deletion Chr12 26506519 26506521 2
Deletion Chr11 28031216 28031217 1
Deletion Chr6 29304480 29304481 1
Deletion Chr11 29612001 29739000 126999 15

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 968007 968010 2
Insertion Chr12 10449511 10449513 1

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 11526080 Chr5 25514272 OsKitaake09g071900
Translocation Chr9 11526379 Chr5 25514269 OsKitaake09g071900
Translocation Chr10 19023153 Chr9 19591677 OsKitaake09g160200
Translocation Chr10 19023536 Chr9 19591687 OsKitaake09g160200
Translocation Chr10 19024121 Chr4 17634049
Translocation Chr12 26952589 Chr11 29611827 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9080670	A-T	Hetero	INTERGENIC
SBS	Chr1	14583272	G-C	Hetero	UTR_3_PRIME
SBS	Chr1	35867507	A-C	Hetero	INTERGENIC
SBS	Chr2	9516339	T-A	Hetero	INTERGENIC
SBS	Chr2	27825502	G-A	Hetero	INTERGENIC
SBS	Chr2	34906442	G-T	Hetero	INTERGENIC
SBS	Chr3	1720026	G-A	Hetero	UTR_3_PRIME
SBS	Chr3	11268629	C-T	Hetero	INTERGENIC
SBS	Chr3	21336203	C-T	Homo	INTERGENIC
SBS	Chr4	36595606	A-G	Hetero	UTR_3_PRIME
SBS	Chr5	1146548	G-A	Hetero	INTERGENIC
SBS	Chr5	16838237	A-G	Hetero	INTERGENIC
SBS	Chr5	16838238	A-G	Hetero	INTERGENIC
SBS	Chr5	29816348	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g285300
SBS	Chr6	2004599	A-G	Hetero	INTERGENIC
SBS	Chr6	4701066	T-C	Hetero	INTERGENIC
SBS	Chr6	13135879	C-T	Hetero	INTERGENIC
SBS	Chr6	13157926	C-T	Hetero	INTERGENIC
SBS	Chr6	26656542	C-A	Hetero	INTERGENIC
SBS	Chr7	7765173	G-A	Hetero	INTERGENIC
SBS	Chr7	24622969	C-T	Hetero	INTERGENIC
SBS	Chr7	28197847	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g266100
SBS	Chr7	29109638	G-A	Hetero	INTERGENIC
SBS	Chr8	18297317	G-C	Hetero	INTERGENIC
SBS	Chr8	27238973	C-T	Homo	INTERGENIC
SBS	Chr9	7394129	T-C	Hetero	INTRON
SBS	Chr9	9274271	A-C	Hetero	INTERGENIC
SBS	Chr9	9294149	G-A	Hetero	INTERGENIC
SBS	Chr9	9760604	G-A	Hetero	INTRON
SBS	Chr9	12500763	T-G	Hetero	INTERGENIC
SBS	Chr9	15104584	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr9	16153880	C-T	Hetero	INTERGENIC
SBS	Chr9	21759144	C-T	Hetero	INTERGENIC
SBS	Chr10	7926	T-G	Hetero	INTERGENIC
SBS	Chr10	2007663	C-T	Hetero	INTERGENIC
SBS	Chr10	3506158	A-T	Hetero	INTRON
SBS	Chr11	8318822	T-C	Hetero	INTERGENIC
SBS	Chr11	20146489	A-C	Hetero	INTERGENIC
SBS	Chr11	28612516	T-A	Hetero	INTERGENIC
SBS	Chr11	28775184	A-G	Hetero	INTERGENIC
SBS	Chr12	710030	G-A	Hetero	INTRON
SBS	Chr12	20313098	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	728429	728496	67
Deletion	Chr8	3422377	3422382	5	OsKitaake08g038300
Deletion	Chr9	6686003	6686105	102
Deletion	Chr9	7681598	7681708	110
Deletion	Chr6	7900236	7900252	16
Deletion	Chr1	9579084	9579085	1	OsKitaake01g122600
Deletion	Chr5	16218001	16239000	20999	2
Deletion	Chr10	18887001	19019000	131999	15
Deletion	Chr1	20644975	20644984	9
Deletion	Chr3	22370078	22370089	11
Deletion	Chr1	25820175	25820178	3
Deletion	Chr12	26506519	26506521	2
Deletion	Chr11	28031216	28031217	1
Deletion	Chr6	29304480	29304481	1
Deletion	Chr11	29612001	29739000	126999	15

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	11526080	Chr5	25514272	OsKitaake09g071900
Translocation	Chr9	11526379	Chr5	25514269	OsKitaake09g071900
Translocation	Chr10	19023153	Chr9	19591677	OsKitaake09g160200
Translocation	Chr10	19023536	Chr9	19591687	OsKitaake09g160200
Translocation	Chr10	19024121	Chr4	17634049
Translocation	Chr12	26952589	Chr11	29611827	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes