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| Mutant Information |
|---|
| Mutant Name | FN4160-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4160-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 47
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 10112840 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 21169931 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 24975667 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 30627101 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 6958112 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 18386822 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 21311185 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 33225156 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 22656561 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 24126673 | T-G | Homo | UTR_5_PRIME | |
| SBS | Chr4 | 259907 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 4512404 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 4686944 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 9850508 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 15371379 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 16517238 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 24015463 | A-C | Homo | INTERGENIC | |
| SBS | Chr4 | 25857177 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 3174745 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 4677451 | G-A | Hetero | UTR_5_PRIME | |
| SBS | Chr5 | 6943900 | G-C | Homo | INTERGENIC | |
| SBS | Chr5 | 10812413 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 25522637 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 28317976 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 16522642 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 25461320 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 15782480 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 2853096 | T-G | Homo | SPLICE_SITE_DONOR | OsKitaake08g031400 |
| SBS | Chr9 | 9759863 | G-A | Homo | INTRON | |
| SBS | Chr9 | 14327529 | T-G | Homo | INTERGENIC | |
| SBS | Chr9 | 20653983 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 5996508 | T-G | Homo | INTERGENIC | |
| SBS | Chr10 | 6683361 | A-G | Homo | INTRON | |
| SBS | Chr10 | 9947479 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 17962832 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 19605324 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake10g144400 |
| SBS | Chr11 | 4376694 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 10930964 | T-A | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 15621755 | T-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g125600 |
| SBS | Chr11 | 15643416 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 15680135 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 15766914 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 16672383 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 19922113 | A-G | Hetero | INTRON | |
| SBS | Chr11 | 22622832 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 15371905 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 26073986 | G-A | Homo | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 3067545 | 3067554 | 9 | |
| Deletion | Chr5 | 3202001 | 3275000 | 72999 | 8 |
| Deletion | Chr11 | 10782622 | 10782626 | 4 | |
| Deletion | Chr5 | 10974886 | 10974890 | 4 | |
| Deletion | Chr6 | 13377582 | 13377584 | 2 | |
| Deletion | Chr4 | 20202830 | 20202832 | 2 | |
| Deletion | Chr10 | 20702002 | 20702007 | 5 | |
| Deletion | Chr8 | 25711883 | 25711894 | 11 | OsKitaake08g203700 |
| Deletion | Chr1 | 34823532 | 34823534 | 2 | |
| Deletion | Chr4 | 36540669 | 36540670 | 1 | |
| Deletion | Chr1 | 38871162 | 38871163 | 1 |
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 3163653 | 3203199 | OsKitaake05g037900 |
| Inversion | Chr5 | 3165750 | 3272366 | OsKitaake05g037900 |
| Inversion | Chr11 | 5116626 | 5154112 | OsKitaake11g064432 |
| Inversion | Chr2 | 27114307 | 27879544 | OsKitaake02g270800 |
| Inversion | Chr2 | 27879304 | 27879544 |
Translocations: 7
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 2270225 | Chr5 | 21845899 | |
| Translocation | Chr12 | 2274796 | Chr5 | 21845898 | |
| Translocation | Chr6 | 6641292 | Chr2 | 27878729 | |
| Translocation | Chr4 | 11133618 | Chr2 | 27878536 | |
| Translocation | Chr4 | 11133985 | Chr2 | 15755068 | OsKitaake02g163400 |
| Translocation | Chr6 | 11261029 | Chr2 | 27878739 | OsKitaake06g124500 |
| Translocation | Chr6 | 11261044 | Chr2 | 27879301 | OsKitaake06g124500 |