Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN4161-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4161-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 21
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1286968 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 6098226 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 29678413 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 37758430 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 6043869 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 25138317 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 33831710 | T-C | Hetero | UTR_3_PRIME | |
| SBS | Chr4 | 4959940 | G-A | Hetero | INTRON | |
| SBS | Chr5 | 12763342 | A-G | Homo | INTERGENIC | |
| SBS | Chr5 | 24570363 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 12406995 | G-T | Homo | INTERGENIC | |
| SBS | Chr6 | 14257971 | T-C | Homo | INTERGENIC | |
| SBS | Chr7 | 8008482 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 15950775 | G-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 16468732 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 15357977 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 4839914 | G-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr11 | 9631296 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 9664599 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 17414874 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 23308693 | A-G | Homo | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 942236 | 942237 | 1 | OsKitaake07g012100 |
| Deletion | Chr9 | 5015150 | 5015151 | 1 | |
| Deletion | Chr11 | 5157449 | 5157468 | 19 | OsKitaake11g064900 |
| Deletion | Chr10 | 5784693 | 5784702 | 9 | |
| Deletion | Chr5 | 5877001 | 5894000 | 16999 | OsKitaake05g062500 |
| Deletion | Chr5 | 5898001 | 5984000 | 85999 | 3 |
| Deletion | Chr8 | 15660104 | 15660108 | 4 | |
| Deletion | Chr11 | 29698963 | 29698968 | 5 | |
| Deletion | Chr3 | 36930412 | 36930423 | 11 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 6008939 | 6027021 | |
| Inversion | Chr8 | 25902044 | 26226697 | OsKitaake08g205900 |
| Inversion | Chr8 | 25902060 | 26226715 | OsKitaake08g205900 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 4945748 | Chr2 | 15886381 | OsKitaake11g063050 |
| Translocation | Chr8 | 22196593 | Chr5 | 217091 |