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Mutant Information

Mutant Name	FN4163-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4163-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9296127 T-C Hetero INTERGENIC
SBS Chr1 14757991 C-T Hetero INTERGENIC
SBS Chr1 23778443 G-A Hetero INTERGENIC
SBS Chr2 15401130 C-T Homo INTRON
SBS Chr2 19389321 A-G Hetero INTERGENIC
SBS Chr3 13299961 A-T Hetero INTERGENIC
SBS Chr3 14845966 G-A Homo INTERGENIC
SBS Chr3 22894903 G-A Hetero INTERGENIC
SBS Chr3 30721855 T-C Homo INTERGENIC
SBS Chr4 894206 A-T Hetero INTERGENIC
SBS Chr4 1631978 C-T Hetero INTERGENIC
SBS Chr4 9165725 C-T Hetero INTERGENIC
SBS Chr5 9522862 T-A Hetero INTERGENIC
SBS Chr5 13660253 A-T Hetero INTERGENIC
SBS Chr5 16097139 G-A Hetero INTERGENIC
SBS Chr6 8316387 T-C Homo NON_SYNONYMOUS_CODING OsKitaake06g104300
SBS Chr6 22284224 G-A Homo INTERGENIC
SBS Chr7 9153748 G-A Hetero INTERGENIC
SBS Chr7 12044746 T-C Hetero INTERGENIC
SBS Chr8 7603490 G-A Homo INTERGENIC
SBS Chr8 14027150 T-C Hetero INTERGENIC
SBS Chr8 17195283 T-A Homo INTERGENIC
SBS Chr8 20476519 G-A Homo INTERGENIC
SBS Chr9 21753703 G-A Hetero SYNONYMOUS_CODING
SBS Chr10 7794199 G-T Homo INTERGENIC
SBS Chr10 23667177 T-A Homo SYNONYMOUS_CODING
SBS Chr11 20557647 C-T Hetero INTRON
SBS Chr11 25568059 G-A Hetero INTERGENIC
SBS Chr12 9440686 C-A Homo INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 194287 194290 3
Deletion Chr1 6324057 6324059 2
Deletion Chr5 8843001 9493000 649999 43
Deletion Chr3 9061001 9131000 69999 5
Deletion Chr7 11020088 11020089 1
Deletion Chr3 11768091 11768093 2
Deletion Chr7 11891213 11891215 2
Deletion Chr2 12311148 12311150 2
Deletion Chr12 13237100 13237103 3
Deletion Chr7 15033001 15114000 80999 6
Deletion Chr10 24004283 24004292 9
Deletion Chr11 24342192 24342230 38
Deletion Chr6 27866196 27866206 10

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr10 13525053 13525057 3
Insertion Chr12 2702007 2702010 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 14991343 15037094 OsKitaake07g125800
Inversion Chr7 14991363 15108712 OsKitaake07g126500
Inversion Chr1 38905069 38924017 OsKitaake01g417600
Inversion Chr1 38905080 38924051 OsKitaake01g417600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9296127	T-C	Hetero	INTERGENIC
SBS	Chr1	14757991	C-T	Hetero	INTERGENIC
SBS	Chr1	23778443	G-A	Hetero	INTERGENIC
SBS	Chr2	15401130	C-T	Homo	INTRON
SBS	Chr2	19389321	A-G	Hetero	INTERGENIC
SBS	Chr3	13299961	A-T	Hetero	INTERGENIC
SBS	Chr3	14845966	G-A	Homo	INTERGENIC
SBS	Chr3	22894903	G-A	Hetero	INTERGENIC
SBS	Chr3	30721855	T-C	Homo	INTERGENIC
SBS	Chr4	894206	A-T	Hetero	INTERGENIC
SBS	Chr4	1631978	C-T	Hetero	INTERGENIC
SBS	Chr4	9165725	C-T	Hetero	INTERGENIC
SBS	Chr5	9522862	T-A	Hetero	INTERGENIC
SBS	Chr5	13660253	A-T	Hetero	INTERGENIC
SBS	Chr5	16097139	G-A	Hetero	INTERGENIC
SBS	Chr6	8316387	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g104300
SBS	Chr6	22284224	G-A	Homo	INTERGENIC
SBS	Chr7	9153748	G-A	Hetero	INTERGENIC
SBS	Chr7	12044746	T-C	Hetero	INTERGENIC
SBS	Chr8	7603490	G-A	Homo	INTERGENIC
SBS	Chr8	14027150	T-C	Hetero	INTERGENIC
SBS	Chr8	17195283	T-A	Homo	INTERGENIC
SBS	Chr8	20476519	G-A	Homo	INTERGENIC
SBS	Chr9	21753703	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr10	7794199	G-T	Homo	INTERGENIC
SBS	Chr10	23667177	T-A	Homo	SYNONYMOUS_CODING
SBS	Chr11	20557647	C-T	Hetero	INTRON
SBS	Chr11	25568059	G-A	Hetero	INTERGENIC
SBS	Chr12	9440686	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	194287	194290	3
Deletion	Chr1	6324057	6324059	2
Deletion	Chr5	8843001	9493000	649999	43
Deletion	Chr3	9061001	9131000	69999	5
Deletion	Chr7	11020088	11020089	1
Deletion	Chr3	11768091	11768093	2
Deletion	Chr7	11891213	11891215	2
Deletion	Chr2	12311148	12311150	2
Deletion	Chr12	13237100	13237103	3
Deletion	Chr7	15033001	15114000	80999	6
Deletion	Chr10	24004283	24004292	9
Deletion	Chr11	24342192	24342230	38
Deletion	Chr6	27866196	27866206	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	14991343	15037094	OsKitaake07g125800
Inversion	Chr7	14991363	15108712	OsKitaake07g126500
Inversion	Chr1	38905069	38924017	OsKitaake01g417600
Inversion	Chr1	38905080	38924051	OsKitaake01g417600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes