Search Kitaake

Mutant Information

Mutant Name	FN4164-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4164-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 915951 A-G Hetero INTRON
SBS Chr2 2212643 T-A Hetero INTRON
SBS Chr2 6540000 A-G Hetero INTERGENIC
SBS Chr2 7926312 G-A Homo INTERGENIC
SBS Chr2 8003009 G-A Homo INTERGENIC
SBS Chr2 8026403 A-T Homo INTERGENIC
SBS Chr2 35733028 T-A Hetero STOP_GAINED OsKitaake02g376000
SBS Chr2 35733029 G-T Hetero SYNONYMOUS_CODING
SBS Chr3 1819385 C-G Homo INTERGENIC
SBS Chr3 36783361 G-A Hetero UTR_5_PRIME
SBS Chr4 451697 C-T Hetero INTERGENIC
SBS Chr4 7790343 A-G Hetero INTERGENIC
SBS Chr4 9397819 G-C Homo INTERGENIC
SBS Chr6 27243305 G-A Homo INTERGENIC
SBS Chr6 29605310 C-T Homo INTERGENIC
SBS Chr7 2196836 C-T Hetero INTERGENIC
SBS Chr7 2196837 C-T Hetero INTERGENIC
SBS Chr7 15117862 A-T Hetero INTERGENIC
SBS Chr7 24326806 C-A Homo INTERGENIC
SBS Chr8 5068984 T-C Homo INTERGENIC
SBS Chr8 10524665 C-A Hetero INTERGENIC
SBS Chr8 19664139 C-A Hetero INTERGENIC
SBS Chr9 13360904 C-A Homo INTERGENIC
SBS Chr9 20880492 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g178400
SBS Chr11 1439525 C-T Hetero INTRON
SBS Chr11 1623175 G-A Hetero UTR_3_PRIME
SBS Chr11 14640283 C-A Homo INTERGENIC
SBS Chr12 3569849 G-T Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 1003064 1003071 7
Deletion Chr6 5366686 5366703 17
Deletion Chr9 12388049 12388051 2 OsKitaake09g080900
Deletion Chr1 15795324 15795328 4 OsKitaake01g172300
Deletion Chr7 19688776 19688783 7
Deletion Chr10 22399213 22399215 2
Deletion Chr1 28056622 28056623 1
Deletion Chr4 36515001 36547000 31999 2
Deletion Chr1 43047894 43047899 5

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 29287059 29287062 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 37645636 37694729

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	915951	A-G	Hetero	INTRON
SBS	Chr2	2212643	T-A	Hetero	INTRON
SBS	Chr2	6540000	A-G	Hetero	INTERGENIC
SBS	Chr2	7926312	G-A	Homo	INTERGENIC
SBS	Chr2	8003009	G-A	Homo	INTERGENIC
SBS	Chr2	8026403	A-T	Homo	INTERGENIC
SBS	Chr2	35733028	T-A	Hetero	STOP_GAINED	OsKitaake02g376000
SBS	Chr2	35733029	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	1819385	C-G	Homo	INTERGENIC
SBS	Chr3	36783361	G-A	Hetero	UTR_5_PRIME
SBS	Chr4	451697	C-T	Hetero	INTERGENIC
SBS	Chr4	7790343	A-G	Hetero	INTERGENIC
SBS	Chr4	9397819	G-C	Homo	INTERGENIC
SBS	Chr6	27243305	G-A	Homo	INTERGENIC
SBS	Chr6	29605310	C-T	Homo	INTERGENIC
SBS	Chr7	2196836	C-T	Hetero	INTERGENIC
SBS	Chr7	2196837	C-T	Hetero	INTERGENIC
SBS	Chr7	15117862	A-T	Hetero	INTERGENIC
SBS	Chr7	24326806	C-A	Homo	INTERGENIC
SBS	Chr8	5068984	T-C	Homo	INTERGENIC
SBS	Chr8	10524665	C-A	Hetero	INTERGENIC
SBS	Chr8	19664139	C-A	Hetero	INTERGENIC
SBS	Chr9	13360904	C-A	Homo	INTERGENIC
SBS	Chr9	20880492	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g178400
SBS	Chr11	1439525	C-T	Hetero	INTRON
SBS	Chr11	1623175	G-A	Hetero	UTR_3_PRIME
SBS	Chr11	14640283	C-A	Homo	INTERGENIC
SBS	Chr12	3569849	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1003064	1003071	7
Deletion	Chr6	5366686	5366703	17
Deletion	Chr9	12388049	12388051	2	OsKitaake09g080900
Deletion	Chr1	15795324	15795328	4	OsKitaake01g172300
Deletion	Chr7	19688776	19688783	7
Deletion	Chr10	22399213	22399215	2
Deletion	Chr1	28056622	28056623	1
Deletion	Chr4	36515001	36547000	31999	2
Deletion	Chr1	43047894	43047899	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	37645636	37694729

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes