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Mutant Information

Mutant Name	FN4165-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4165-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 29894766 C-T Hetero INTERGENIC
SBS Chr1 32731294 G-A Hetero INTERGENIC
SBS Chr1 41503520 C-T Hetero INTERGENIC
SBS Chr1 42027781 C-T Hetero INTERGENIC
SBS Chr2 8924041 C-A Homo INTERGENIC
SBS Chr2 24286802 G-A Homo INTERGENIC
SBS Chr2 26269021 G-A Hetero INTERGENIC
SBS Chr2 29492192 A-T Homo UTR_3_PRIME
SBS Chr2 29492197 G-T Homo UTR_3_PRIME
SBS Chr3 10033282 A-T Hetero SYNONYMOUS_CODING
SBS Chr4 3247913 G-T Hetero INTERGENIC
SBS Chr4 16654090 T-C Hetero INTERGENIC
SBS Chr4 18175157 G-A Hetero INTERGENIC
SBS Chr4 22520100 C-T Hetero INTERGENIC
SBS Chr4 27961022 A-T Hetero INTRON
SBS Chr4 28162374 A-T Hetero INTERGENIC
SBS Chr4 34276920 G-T Hetero INTRON
SBS Chr5 26173615 G-C Hetero INTERGENIC
SBS Chr7 12489710 C-A Homo INTERGENIC
SBS Chr7 12748991 T-A Homo INTERGENIC
SBS Chr7 21453941 T-G Hetero INTERGENIC
SBS Chr8 16070650 C-T Hetero INTERGENIC
SBS Chr8 16435466 G-A Hetero INTERGENIC
SBS Chr9 5580036 T-A Hetero INTERGENIC
SBS Chr9 11924975 A-T Hetero INTERGENIC
SBS Chr9 11924988 A-G Hetero INTERGENIC
SBS Chr10 11723141 A-T Homo INTERGENIC
SBS Chr10 13515402 A-G Hetero INTERGENIC
SBS Chr10 15259408 C-T Hetero INTERGENIC
SBS Chr10 20202731 G-A Homo INTERGENIC
SBS Chr11 23318322 C-G Hetero INTERGENIC
SBS Chr12 5249961 G-A Hetero INTRON
SBS Chr12 8900081 A-T Hetero INTERGENIC
SBS Chr12 15412925 G-A Hetero INTERGENIC
SBS Chr12 17079197 G-A Hetero INTERGENIC
SBS Chr12 23165881 T-C Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 704969 704971 2
Deletion Chr10 2281114 2281116 2
Deletion Chr6 6247001 6260000 12999 2
Deletion Chr3 8111842 8111844 2
Deletion Chr2 20450562 20450564 2
Deletion Chr5 21120959 21120962 3
Deletion Chr4 33564161 33564166 5
Deletion Chr4 35121686 35121701 15

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 8969340 8969343 2
Insertion Chr4 20501335 20501339 3 OsKitaake04g110600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	29894766	C-T	Hetero	INTERGENIC
SBS	Chr1	32731294	G-A	Hetero	INTERGENIC
SBS	Chr1	41503520	C-T	Hetero	INTERGENIC
SBS	Chr1	42027781	C-T	Hetero	INTERGENIC
SBS	Chr2	8924041	C-A	Homo	INTERGENIC
SBS	Chr2	24286802	G-A	Homo	INTERGENIC
SBS	Chr2	26269021	G-A	Hetero	INTERGENIC
SBS	Chr2	29492192	A-T	Homo	UTR_3_PRIME
SBS	Chr2	29492197	G-T	Homo	UTR_3_PRIME
SBS	Chr3	10033282	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	3247913	G-T	Hetero	INTERGENIC
SBS	Chr4	16654090	T-C	Hetero	INTERGENIC
SBS	Chr4	18175157	G-A	Hetero	INTERGENIC
SBS	Chr4	22520100	C-T	Hetero	INTERGENIC
SBS	Chr4	27961022	A-T	Hetero	INTRON
SBS	Chr4	28162374	A-T	Hetero	INTERGENIC
SBS	Chr4	34276920	G-T	Hetero	INTRON
SBS	Chr5	26173615	G-C	Hetero	INTERGENIC
SBS	Chr7	12489710	C-A	Homo	INTERGENIC
SBS	Chr7	12748991	T-A	Homo	INTERGENIC
SBS	Chr7	21453941	T-G	Hetero	INTERGENIC
SBS	Chr8	16070650	C-T	Hetero	INTERGENIC
SBS	Chr8	16435466	G-A	Hetero	INTERGENIC
SBS	Chr9	5580036	T-A	Hetero	INTERGENIC
SBS	Chr9	11924975	A-T	Hetero	INTERGENIC
SBS	Chr9	11924988	A-G	Hetero	INTERGENIC
SBS	Chr10	11723141	A-T	Homo	INTERGENIC
SBS	Chr10	13515402	A-G	Hetero	INTERGENIC
SBS	Chr10	15259408	C-T	Hetero	INTERGENIC
SBS	Chr10	20202731	G-A	Homo	INTERGENIC
SBS	Chr11	23318322	C-G	Hetero	INTERGENIC
SBS	Chr12	5249961	G-A	Hetero	INTRON
SBS	Chr12	8900081	A-T	Hetero	INTERGENIC
SBS	Chr12	15412925	G-A	Hetero	INTERGENIC
SBS	Chr12	17079197	G-A	Hetero	INTERGENIC
SBS	Chr12	23165881	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	704969	704971	2
Deletion	Chr10	2281114	2281116	2
Deletion	Chr6	6247001	6260000	12999	2
Deletion	Chr3	8111842	8111844	2
Deletion	Chr2	20450562	20450564	2
Deletion	Chr5	21120959	21120962	3
Deletion	Chr4	33564161	33564166	5
Deletion	Chr4	35121686	35121701	15

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes