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Mutant Information |
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Mutant Name | FN4166-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4166-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 8219961 | T-C | Hetero | INTERGENIC | |
SBS | Chr1 | 22610901 | G-A | Hetero | INTERGENIC | |
SBS | Chr1 | 30561793 | T-C | Homo | INTERGENIC | |
SBS | Chr2 | 7343324 | G-T | Homo | INTERGENIC | |
SBS | Chr2 | 17227444 | T-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g173600 |
SBS | Chr2 | 24219470 | G-A | Hetero | INTRON | |
SBS | Chr2 | 24219471 | C-A | Hetero | INTRON | |
SBS | Chr2 | 35398296 | G-C | Homo | INTERGENIC | |
SBS | Chr3 | 8742503 | C-T | Homo | INTERGENIC | |
SBS | Chr3 | 9990901 | T-C | Homo | INTERGENIC | |
SBS | Chr3 | 15873945 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g203500 |
SBS | Chr3 | 28210060 | G-A | Homo | INTERGENIC | |
SBS | Chr4 | 7664993 | C-G | Hetero | INTERGENIC | |
SBS | Chr4 | 9286269 | T-C | Hetero | INTERGENIC | |
SBS | Chr4 | 20398342 | T-A | Hetero | INTRON | |
SBS | Chr4 | 27759163 | A-G | Hetero | INTERGENIC | |
SBS | Chr4 | 32324603 | G-A | Hetero | INTERGENIC | |
SBS | Chr5 | 6264553 | T-C | Homo | INTERGENIC | |
SBS | Chr6 | 6112430 | C-T | Hetero | INTERGENIC | |
SBS | Chr6 | 28178157 | C-T | Hetero | INTERGENIC | |
SBS | Chr7 | 16063686 | T-G | Hetero | INTERGENIC | |
SBS | Chr7 | 28863672 | T-G | Homo | INTERGENIC | |
SBS | Chr9 | 11650453 | A-G | Homo | INTERGENIC | |
SBS | Chr10 | 8373053 | G-A | Hetero | INTERGENIC | |
SBS | Chr11 | 1402516 | T-A | Homo | INTRON | |
SBS | Chr11 | 16814790 | G-T | Hetero | INTERGENIC | |
SBS | Chr11 | 26847345 | G-A | Homo | INTERGENIC | |
SBS | Chr11 | 28806555 | G-T | Homo | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr6 | 7105 | 7456 | 351 | |
Deletion | Chr2 | 1512592 | 1512594 | 2 | |
Deletion | Chr12 | 5048512 | 5048515 | 3 | |
Deletion | Chr5 | 10710206 | 10710207 | 1 | |
Deletion | Chr3 | 12016711 | 12016713 | 2 | |
Deletion | Chr11 | 12396628 | 12396635 | 7 | |
Deletion | Chr2 | 13029262 | 13029268 | 6 | |
Deletion | Chr5 | 13868961 | 13868972 | 11 | OsKitaake05g107600 |
Deletion | Chr7 | 19288713 | 19288715 | 2 | |
Deletion | Chr9 | 22013691 | 22013702 | 11 | |
Deletion | Chr2 | 30280846 | 30280855 | 9 | |
Deletion | Chr1 | 31050450 | 31050454 | 4 | OsKitaake01g309400 |
Deletion | Chr3 | 37637542 | 37637549 | 7 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Insertion | Chr2 | 28105483 | 28105485 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr3 | 1907611 | 2235582 | 2 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
Translocation | Chr10 | 3806990 | Chr4 | 6292509 |