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Mutant Information 

Mutant NameFN4166-S  [Download]
Generation M2
Genus Species Oryza Sativa
Cultivar Kitaake
Alignment File (BAM File) Download FN4166-S Alignment File
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS  Chr18219961T-CHeteroINTERGENIC
SBS  Chr122610901G-AHeteroINTERGENIC
SBS  Chr130561793T-CHomoINTERGENIC
SBS  Chr27343324G-THomoINTERGENIC
SBS  Chr217227444T-AHomoNON_SYNONYMOUS_CODINGOsKitaake02g173600
SBS  Chr224219470G-AHeteroINTRON
SBS  Chr224219471C-AHeteroINTRON
SBS  Chr235398296G-CHomoINTERGENIC
SBS  Chr38742503C-THomoINTERGENIC
SBS  Chr39990901T-CHomoINTERGENIC
SBS  Chr315873945G-THomoNON_SYNONYMOUS_CODINGOsKitaake03g203500
SBS  Chr328210060G-AHomoINTERGENIC
SBS  Chr47664993C-GHeteroINTERGENIC
SBS  Chr49286269T-CHeteroINTERGENIC
SBS  Chr420398342T-AHeteroINTRON
SBS  Chr427759163A-GHeteroINTERGENIC
SBS  Chr432324603G-AHeteroINTERGENIC
SBS  Chr56264553T-CHomoINTERGENIC
SBS  Chr66112430C-THeteroINTERGENIC
SBS  Chr628178157C-THeteroINTERGENIC
SBS  Chr716063686T-GHeteroINTERGENIC
SBS  Chr728863672T-GHomoINTERGENIC
SBS  Chr911650453A-GHomoINTERGENIC
SBS  Chr108373053G-AHeteroINTERGENIC
SBS  Chr111402516T-AHomoINTRON
SBS  Chr1116814790G-THeteroINTERGENIC
SBS  Chr1126847345G-AHomoINTERGENIC
SBS  Chr1128806555G-THomoINTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion  Chr671057456351
Deletion  Chr2151259215125942
Deletion  Chr12504851250485153
Deletion  Chr510710206107102071
Deletion  Chr312016711120167132
Deletion  Chr1112396628123966357
Deletion  Chr213029262130292686
Deletion  Chr5138689611386897211OsKitaake05g107600
Deletion  Chr719288713192887152
Deletion  Chr9220136912201370211
Deletion  Chr230280846302808559
Deletion  Chr131050450310504544OsKitaake01g309400
Deletion  Chr337637542376375497

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion  Chr228105483281054851

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion  Chr3190761122355822

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation  Chr103806990Chr46292509