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Mutant Information

Mutant Name	FN4167-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4167-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9813666 T-A Hetero INTERGENIC
SBS Chr1 16718457 A-C Homo INTERGENIC
SBS Chr1 31833199 C-A Hetero INTERGENIC
SBS Chr1 41700667 G-A Hetero INTRON
SBS Chr2 24447056 C-T Homo INTERGENIC
SBS Chr3 14216288 T-C Homo INTRON
SBS Chr3 19726977 G-C Hetero INTERGENIC
SBS Chr4 1661374 C-G Homo INTERGENIC
SBS Chr4 12228276 C-T Homo INTERGENIC
SBS Chr4 28156461 G-A Homo INTERGENIC
SBS Chr5 20633845 A-G Hetero INTERGENIC
SBS Chr6 1239752 G-A Hetero INTERGENIC
SBS Chr6 14340395 T-C Homo INTERGENIC
SBS Chr7 12441073 C-T Homo INTERGENIC
SBS Chr7 22912161 C-T Hetero INTRON
SBS Chr7 22912162 C-T Hetero INTRON
SBS Chr7 26429408 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake07g243900
SBS Chr7 26791686 T-A Hetero INTERGENIC
SBS Chr8 7909685 A-T Hetero INTERGENIC
SBS Chr8 9733898 G-A Homo INTERGENIC
SBS Chr8 18927057 C-A Homo INTRON
SBS Chr9 9996940 G-A Hetero INTERGENIC
SBS Chr10 1434575 C-T Hetero INTERGENIC
SBS Chr11 6723838 T-G Hetero INTERGENIC
SBS Chr11 10075526 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake11g102600
SBS Chr11 11211563 C-T Hetero STOP_GAINED OsKitaake11g107500
SBS Chr11 29239550 T-A Homo INTERGENIC
SBS Chr12 8022726 T-C Homo INTERGENIC
SBS Chr12 8641412 G-A Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 742530 742532 2
Deletion Chr7 4715563 4715564 1
Deletion Chr12 5704406 5704407 1
Deletion Chr5 6169274 6169275 1
Deletion Chr12 6658116 6658117 1
Deletion Chr12 8015900 8015901 1
Deletion Chr10 9296033 9296036 3
Deletion Chr3 10057001 10117000 59999 11
Deletion Chr5 10083795 10083805 10
Deletion Chr8 14433618 14433620 2
Deletion Chr4 15492249 15492256 7
Deletion Chr1 22228875 22228898 23
Deletion Chr2 28132953 28132958 5
Deletion Chr2 28818017 28818032 15

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 19991864 19991867 2
Insertion Chr8 29297879 29297882 2
Insertion Chr11 13760923 13760925 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 14310110 14841954 OsKitaake07g125001
Inversion Chr7 14310122 14841959 OsKitaake07g125001

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 17251777 Chr5 7914611
Translocation Chr11 17258033 Chr5 7914608

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9813666	T-A	Hetero	INTERGENIC
SBS	Chr1	16718457	A-C	Homo	INTERGENIC
SBS	Chr1	31833199	C-A	Hetero	INTERGENIC
SBS	Chr1	41700667	G-A	Hetero	INTRON
SBS	Chr2	24447056	C-T	Homo	INTERGENIC
SBS	Chr3	14216288	T-C	Homo	INTRON
SBS	Chr3	19726977	G-C	Hetero	INTERGENIC
SBS	Chr4	1661374	C-G	Homo	INTERGENIC
SBS	Chr4	12228276	C-T	Homo	INTERGENIC
SBS	Chr4	28156461	G-A	Homo	INTERGENIC
SBS	Chr5	20633845	A-G	Hetero	INTERGENIC
SBS	Chr6	1239752	G-A	Hetero	INTERGENIC
SBS	Chr6	14340395	T-C	Homo	INTERGENIC
SBS	Chr7	12441073	C-T	Homo	INTERGENIC
SBS	Chr7	22912161	C-T	Hetero	INTRON
SBS	Chr7	22912162	C-T	Hetero	INTRON
SBS	Chr7	26429408	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g243900
SBS	Chr7	26791686	T-A	Hetero	INTERGENIC
SBS	Chr8	7909685	A-T	Hetero	INTERGENIC
SBS	Chr8	9733898	G-A	Homo	INTERGENIC
SBS	Chr8	18927057	C-A	Homo	INTRON
SBS	Chr9	9996940	G-A	Hetero	INTERGENIC
SBS	Chr10	1434575	C-T	Hetero	INTERGENIC
SBS	Chr11	6723838	T-G	Hetero	INTERGENIC
SBS	Chr11	10075526	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g102600
SBS	Chr11	11211563	C-T	Hetero	STOP_GAINED	OsKitaake11g107500
SBS	Chr11	29239550	T-A	Homo	INTERGENIC
SBS	Chr12	8022726	T-C	Homo	INTERGENIC
SBS	Chr12	8641412	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	742530	742532	2
Deletion	Chr7	4715563	4715564	1
Deletion	Chr12	5704406	5704407	1
Deletion	Chr5	6169274	6169275	1
Deletion	Chr12	6658116	6658117	1
Deletion	Chr12	8015900	8015901	1
Deletion	Chr10	9296033	9296036	3
Deletion	Chr3	10057001	10117000	59999	11
Deletion	Chr5	10083795	10083805	10
Deletion	Chr8	14433618	14433620	2
Deletion	Chr4	15492249	15492256	7
Deletion	Chr1	22228875	22228898	23
Deletion	Chr2	28132953	28132958	5
Deletion	Chr2	28818017	28818032	15

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	14310110	14841954	OsKitaake07g125001
Inversion	Chr7	14310122	14841959	OsKitaake07g125001

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes