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Mutant Information

Mutant Name	FN417-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN417-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4311669 C-A Hetero INTERGENIC
SBS Chr1 14228583 C-T Hetero INTERGENIC
SBS Chr1 16755575 A-G Hetero INTERGENIC
SBS Chr1 18464138 G-C Hetero INTERGENIC
SBS Chr1 19258365 T-G Hetero INTERGENIC
SBS Chr1 42270672 A-G Hetero UTR_5_PRIME
SBS Chr2 21294771 A-C Hetero INTERGENIC
SBS Chr3 10540698 T-A Hetero INTERGENIC
SBS Chr3 12119251 T-A Hetero INTRON
SBS Chr4 3874206 C-G Hetero INTERGENIC
SBS Chr4 20970154 G-T Homo INTERGENIC
SBS Chr4 24415422 A-G Homo INTERGENIC
SBS Chr4 27942568 A-G Hetero INTERGENIC
SBS Chr5 2329729 G-A Hetero UTR_3_PRIME
SBS Chr5 9310256 G-A Homo INTERGENIC
SBS Chr5 28421422 G-A Hetero INTERGENIC
SBS Chr6 546797 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g004800
SBS Chr6 814010 T-C Hetero INTRON
SBS Chr6 2310474 C-G Hetero INTERGENIC
SBS Chr6 4467361 T-A Hetero INTERGENIC
SBS Chr8 10607783 C-T Hetero INTERGENIC
SBS Chr9 20857608 G-A Homo INTERGENIC
SBS Chr10 12533524 C-T Homo INTERGENIC
SBS Chr10 12934959 T-C Homo INTERGENIC
SBS Chr10 13336683 C-A Homo INTERGENIC
SBS Chr11 1615372 C-T Hetero INTERGENIC
SBS Chr11 9494749 C-T Hetero INTRON
SBS Chr11 12395129 T-A Hetero INTRON
SBS Chr11 15446001 G-T Homo INTERGENIC
SBS Chr11 25012177 A-G Hetero INTERGENIC
SBS Chr12 7754287 C-A Homo INTERGENIC
SBS Chr12 9065885 G-A Hetero INTERGENIC
SBS Chr12 24555643 G-T Hetero INTRON

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 488930 488932 2
Deletion Chr6 6239023 6239034 11
Deletion Chr7 9231001 9254000 22999
Deletion Chr3 10195214 10195215 1
Deletion Chr8 13588815 13588818 3
Deletion Chr12 16801472 16801477 5
Deletion Chr5 17984001 18024000 39999 7
Deletion Chr11 21530688 21530689 1
Deletion Chr1 32663311 32663321 10

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 642505 642508 2
Insertion Chr2 30602361 30602365 3
Insertion Chr6 20929533 20929536 2
Insertion Chr8 25883556 25883559 2
Insertion Chr11 4030508 4030511 2
Insertion Chr1 8263843 8263846 2
Insertion Chr12 16545651 16545655 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 947037 1866895 OsKitaake09g006028
Inversion Chr9 947057 1866893 OsKitaake09g006028

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4311669	C-A	Hetero	INTERGENIC
SBS	Chr1	14228583	C-T	Hetero	INTERGENIC
SBS	Chr1	16755575	A-G	Hetero	INTERGENIC
SBS	Chr1	18464138	G-C	Hetero	INTERGENIC
SBS	Chr1	19258365	T-G	Hetero	INTERGENIC
SBS	Chr1	42270672	A-G	Hetero	UTR_5_PRIME
SBS	Chr2	21294771	A-C	Hetero	INTERGENIC
SBS	Chr3	10540698	T-A	Hetero	INTERGENIC
SBS	Chr3	12119251	T-A	Hetero	INTRON
SBS	Chr4	3874206	C-G	Hetero	INTERGENIC
SBS	Chr4	20970154	G-T	Homo	INTERGENIC
SBS	Chr4	24415422	A-G	Homo	INTERGENIC
SBS	Chr4	27942568	A-G	Hetero	INTERGENIC
SBS	Chr5	2329729	G-A	Hetero	UTR_3_PRIME
SBS	Chr5	9310256	G-A	Homo	INTERGENIC
SBS	Chr5	28421422	G-A	Hetero	INTERGENIC
SBS	Chr6	546797	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g004800
SBS	Chr6	814010	T-C	Hetero	INTRON
SBS	Chr6	2310474	C-G	Hetero	INTERGENIC
SBS	Chr6	4467361	T-A	Hetero	INTERGENIC
SBS	Chr8	10607783	C-T	Hetero	INTERGENIC
SBS	Chr9	20857608	G-A	Homo	INTERGENIC
SBS	Chr10	12533524	C-T	Homo	INTERGENIC
SBS	Chr10	12934959	T-C	Homo	INTERGENIC
SBS	Chr10	13336683	C-A	Homo	INTERGENIC
SBS	Chr11	1615372	C-T	Hetero	INTERGENIC
SBS	Chr11	9494749	C-T	Hetero	INTRON
SBS	Chr11	12395129	T-A	Hetero	INTRON
SBS	Chr11	15446001	G-T	Homo	INTERGENIC
SBS	Chr11	25012177	A-G	Hetero	INTERGENIC
SBS	Chr12	7754287	C-A	Homo	INTERGENIC
SBS	Chr12	9065885	G-A	Hetero	INTERGENIC
SBS	Chr12	24555643	G-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	488930	488932	2
Deletion	Chr6	6239023	6239034	11
Deletion	Chr7	9231001	9254000	22999
Deletion	Chr3	10195214	10195215	1
Deletion	Chr8	13588815	13588818	3
Deletion	Chr12	16801472	16801477	5
Deletion	Chr5	17984001	18024000	39999	7
Deletion	Chr11	21530688	21530689	1
Deletion	Chr1	32663311	32663321	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	947037	1866895	OsKitaake09g006028
Inversion	Chr9	947057	1866893	OsKitaake09g006028

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes