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Mutant Information

Mutant Name	FN4172-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4172-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17148666 C-T Homo INTERGENIC
SBS Chr1 41344798 C-T Hetero INTERGENIC
SBS Chr1 43255321 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g477800
SBS Chr2 8333179 T-A Homo INTERGENIC
SBS Chr2 18497374 G-A Homo INTERGENIC
SBS Chr2 27003735 C-A Hetero INTERGENIC
SBS Chr2 29655272 G-A Hetero INTERGENIC
SBS Chr3 24983598 G-A Hetero INTERGENIC
SBS Chr3 37673855 C-A Homo INTERGENIC
SBS Chr4 28441284 G-A Hetero INTERGENIC
SBS Chr4 33701060 G-T Homo UTR_3_PRIME
SBS Chr5 13703032 A-G Hetero INTERGENIC
SBS Chr5 13703034 G-A Hetero INTERGENIC
SBS Chr6 21844035 C-G Hetero INTERGENIC
SBS Chr7 168964 C-T Hetero INTERGENIC
SBS Chr7 15910642 A-T Hetero INTERGENIC
SBS Chr7 23716477 G-A Homo INTERGENIC
SBS Chr8 10890617 T-A Hetero INTERGENIC
SBS Chr8 17768351 C-T Hetero INTERGENIC
SBS Chr9 901087 C-G Homo INTERGENIC
SBS Chr9 6298754 C-T Homo INTERGENIC
SBS Chr9 7360715 T-A Homo INTERGENIC
SBS Chr9 8323735 C-T Homo INTERGENIC
SBS Chr9 16381042 A-T Homo INTERGENIC
SBS Chr10 3853071 A-G Homo INTERGENIC
SBS Chr10 16965710 T-A Homo SYNONYMOUS_CODING
SBS Chr10 16965711 G-A Homo NON_SYNONYMOUS_CODING OsKitaake10g116400
SBS Chr10 17913588 A-C Homo NON_SYNONYMOUS_CODING OsKitaake10g125101
SBS Chr11 18576096 G-T Hetero INTERGENIC
SBS Chr12 21427421 C-A Hetero INTERGENIC
SBS Chr12 26191961 A-T Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1144786 1144796 10
Deletion Chr11 1396105 1396113 8
Deletion Chr10 1507422 1507439 17
Deletion Chr5 2927862 2927865 3
Deletion Chr8 6248001 6289000 40999 3
Deletion Chr7 7063830 7063842 12
Deletion Chr10 12726046 12726050 4
Deletion Chr6 12733583 12733598 15
Deletion Chr5 16002768 16002874 106
Deletion Chr6 16356637 16356639 2
Deletion Chr10 20198357 20198366 9 OsKitaake10g153700
Deletion Chr10 20337039 20337044 5
Deletion Chr6 20449406 20449412 6
Deletion Chr7 20609407 20609416 9
Deletion Chr11 23499864 23499941 77
Deletion Chr2 25558001 25989000 430999 43
Deletion Chr1 27558742 27558745 3

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 15281409 15281412 2
Insertion Chr11 16991160 16991163 2
Insertion Chr12 8742830 8742834 3
Insertion Chr10 8656412 8656415 2 OsKitaake10g053166

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 16960604 17765997 OsKitaake10g122600
Inversion Chr10 16960608 17766006 OsKitaake10g122600
Inversion Chr11 24705691 25556831
Inversion Chr4 32857597 32980280 2
Inversion Chr4 32857600 32980280 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17148666	C-T	Homo	INTERGENIC
SBS	Chr1	41344798	C-T	Hetero	INTERGENIC
SBS	Chr1	43255321	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g477800
SBS	Chr2	8333179	T-A	Homo	INTERGENIC
SBS	Chr2	18497374	G-A	Homo	INTERGENIC
SBS	Chr2	27003735	C-A	Hetero	INTERGENIC
SBS	Chr2	29655272	G-A	Hetero	INTERGENIC
SBS	Chr3	24983598	G-A	Hetero	INTERGENIC
SBS	Chr3	37673855	C-A	Homo	INTERGENIC
SBS	Chr4	28441284	G-A	Hetero	INTERGENIC
SBS	Chr4	33701060	G-T	Homo	UTR_3_PRIME
SBS	Chr5	13703032	A-G	Hetero	INTERGENIC
SBS	Chr5	13703034	G-A	Hetero	INTERGENIC
SBS	Chr6	21844035	C-G	Hetero	INTERGENIC
SBS	Chr7	168964	C-T	Hetero	INTERGENIC
SBS	Chr7	15910642	A-T	Hetero	INTERGENIC
SBS	Chr7	23716477	G-A	Homo	INTERGENIC
SBS	Chr8	10890617	T-A	Hetero	INTERGENIC
SBS	Chr8	17768351	C-T	Hetero	INTERGENIC
SBS	Chr9	901087	C-G	Homo	INTERGENIC
SBS	Chr9	6298754	C-T	Homo	INTERGENIC
SBS	Chr9	7360715	T-A	Homo	INTERGENIC
SBS	Chr9	8323735	C-T	Homo	INTERGENIC
SBS	Chr9	16381042	A-T	Homo	INTERGENIC
SBS	Chr10	3853071	A-G	Homo	INTERGENIC
SBS	Chr10	16965710	T-A	Homo	SYNONYMOUS_CODING
SBS	Chr10	16965711	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g116400
SBS	Chr10	17913588	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g125101
SBS	Chr11	18576096	G-T	Hetero	INTERGENIC
SBS	Chr12	21427421	C-A	Hetero	INTERGENIC
SBS	Chr12	26191961	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1144786	1144796	10
Deletion	Chr11	1396105	1396113	8
Deletion	Chr10	1507422	1507439	17
Deletion	Chr5	2927862	2927865	3
Deletion	Chr8	6248001	6289000	40999	3
Deletion	Chr7	7063830	7063842	12
Deletion	Chr10	12726046	12726050	4
Deletion	Chr6	12733583	12733598	15
Deletion	Chr5	16002768	16002874	106
Deletion	Chr6	16356637	16356639	2
Deletion	Chr10	20198357	20198366	9	OsKitaake10g153700
Deletion	Chr10	20337039	20337044	5
Deletion	Chr6	20449406	20449412	6
Deletion	Chr7	20609407	20609416	9
Deletion	Chr11	23499864	23499941	77
Deletion	Chr2	25558001	25989000	430999	43
Deletion	Chr1	27558742	27558745	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	16960604	17765997	OsKitaake10g122600
Inversion	Chr10	16960608	17766006	OsKitaake10g122600
Inversion	Chr11	24705691	25556831
Inversion	Chr4	32857597	32980280	2
Inversion	Chr4	32857600	32980280	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes