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Mutant Information

Mutant Name	FN4173-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4173-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 4755653 A-G Hetero INTERGENIC
SBS Chr2 8342426 G-A Hetero INTERGENIC
SBS Chr2 18143976 G-T Hetero SYNONYMOUS_CODING
SBS Chr2 18146759 A-T Hetero INTRON
SBS Chr4 4195595 C-T Hetero INTERGENIC
SBS Chr4 4665103 C-G Hetero INTERGENIC
SBS Chr4 10352859 A-G Hetero INTERGENIC
SBS Chr5 11138336 C-T Hetero INTERGENIC
SBS Chr5 11138337 A-T Hetero INTERGENIC
SBS Chr6 4196347 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g058200
SBS Chr6 25168551 C-A Hetero INTERGENIC
SBS Chr7 153988 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake07g001100
SBS Chr7 28402718 G-A Homo INTERGENIC
SBS Chr8 1197337 G-A Hetero INTERGENIC
SBS Chr8 20789827 C-T Hetero INTERGENIC
SBS Chr9 8343138 G-C Homo INTERGENIC
SBS Chr9 11928670 A-G Homo INTERGENIC
SBS Chr10 739185 C-T Hetero INTERGENIC
SBS Chr10 1087175 C-T Hetero INTERGENIC
SBS Chr10 2743233 T-C Homo SYNONYMOUS_CODING
SBS Chr10 4941897 G-A Hetero INTERGENIC
SBS Chr11 17926511 C-A Homo INTERGENIC
SBS Chr11 19079634 G-A Homo INTERGENIC
SBS Chr11 22887367 T-C Hetero SYNONYMOUS_CODING
SBS Chr12 12681689 G-A Homo INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1346891 1346893 2
Deletion Chr7 2335623 2335624 1
Deletion Chr3 14127711 14127721 10
Deletion Chr3 14153237 14153240 3
Deletion Chr9 15255236 15255246 10
Deletion Chr1 18204325 18204333 8
Deletion Chr8 22916575 22916578 3
Deletion Chr3 23256894 23256896 2
Deletion Chr8 26341732 26341734 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 6777026 6777031 4
Insertion Chr2 22124254 22124261 6
Insertion Chr2 27338638 27338640 1
Insertion Chr6 5878477 5878480 2
Insertion Chr12 19581859 19581862 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 24665431 25135125 OsKitaake01g238100
Inversion Chr1 25142088 25713849 OsKitaake01g250000
Inversion Chr3 34198267 34202989
Inversion Chr3 34198270 34202991

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 2402901 Chr3 20715673 OsKitaake03g231800
Translocation Chr7 2402913 Chr3 20715164 OsKitaake03g231800
Translocation Chr4 14394290 Chr1 26784385

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	4755653	A-G	Hetero	INTERGENIC
SBS	Chr2	8342426	G-A	Hetero	INTERGENIC
SBS	Chr2	18143976	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	18146759	A-T	Hetero	INTRON
SBS	Chr4	4195595	C-T	Hetero	INTERGENIC
SBS	Chr4	4665103	C-G	Hetero	INTERGENIC
SBS	Chr4	10352859	A-G	Hetero	INTERGENIC
SBS	Chr5	11138336	C-T	Hetero	INTERGENIC
SBS	Chr5	11138337	A-T	Hetero	INTERGENIC
SBS	Chr6	4196347	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g058200
SBS	Chr6	25168551	C-A	Hetero	INTERGENIC
SBS	Chr7	153988	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g001100
SBS	Chr7	28402718	G-A	Homo	INTERGENIC
SBS	Chr8	1197337	G-A	Hetero	INTERGENIC
SBS	Chr8	20789827	C-T	Hetero	INTERGENIC
SBS	Chr9	8343138	G-C	Homo	INTERGENIC
SBS	Chr9	11928670	A-G	Homo	INTERGENIC
SBS	Chr10	739185	C-T	Hetero	INTERGENIC
SBS	Chr10	1087175	C-T	Hetero	INTERGENIC
SBS	Chr10	2743233	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr10	4941897	G-A	Hetero	INTERGENIC
SBS	Chr11	17926511	C-A	Homo	INTERGENIC
SBS	Chr11	19079634	G-A	Homo	INTERGENIC
SBS	Chr11	22887367	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr12	12681689	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1346891	1346893	2
Deletion	Chr7	2335623	2335624	1
Deletion	Chr3	14127711	14127721	10
Deletion	Chr3	14153237	14153240	3
Deletion	Chr9	15255236	15255246	10
Deletion	Chr1	18204325	18204333	8
Deletion	Chr8	22916575	22916578	3
Deletion	Chr3	23256894	23256896	2
Deletion	Chr8	26341732	26341734	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	24665431	25135125	OsKitaake01g238100
Inversion	Chr1	25142088	25713849	OsKitaake01g250000
Inversion	Chr3	34198267	34202989
Inversion	Chr3	34198270	34202991

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes