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| Mutant Information |
|---|
| Mutant Name | FN4174-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4174-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 23720682 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 34909440 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 41513679 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 7647592 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 32977152 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 35666491 | T-C | Hetero | UTR_5_PRIME | |
| SBS | Chr2 | 37168259 | C-T | Hetero | INTRON | |
| SBS | Chr3 | 2419473 | A-T | Hetero | INTRON | |
| SBS | Chr3 | 4683888 | A-G | Hetero | SPLICE_SITE_REGION | |
| SBS | Chr3 | 8539275 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 12523114 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 20134558 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 31361634 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g245900 |
| SBS | Chr5 | 10005978 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g089602 |
| SBS | Chr5 | 20018063 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 25436885 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 19678573 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 19678574 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 19678575 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 2954684 | T-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 9395373 | A-T | Hetero | INTRON | |
| SBS | Chr7 | 23069209 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g199000 |
| SBS | Chr8 | 20853511 | G-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 13019990 | G-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 14451961 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 4980814 | G-T | Homo | INTERGENIC | |
| SBS | Chr10 | 9362617 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 10080070 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 13751510 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 8028438 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 18383921 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 9508405 | G-A | Homo | INTERGENIC |
Deletions: 19
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 7248782 | 7248783 | 1 | |
| Deletion | Chr2 | 8403361 | 8403364 | 3 | |
| Deletion | Chr9 | 8587646 | 8587654 | 8 | |
| Deletion | Chr7 | 14232185 | 14232187 | 2 | |
| Deletion | Chr6 | 14240253 | 14240255 | 2 | |
| Deletion | Chr2 | 16642001 | 17207000 | 564999 | 25 |
| Deletion | Chr4 | 16705715 | 16705716 | 1 | |
| Deletion | Chr3 | 17583168 | 17583172 | 4 | |
| Deletion | Chr1 | 19906702 | 19906708 | 6 | |
| Deletion | Chr5 | 19906944 | 19906964 | 20 | |
| Deletion | Chr12 | 23702087 | 23702090 | 3 | |
| Deletion | Chr12 | 24589319 | 24589322 | 3 | |
| Deletion | Chr5 | 25426983 | 25426984 | 1 | |
| Deletion | Chr3 | 25618809 | 25618815 | 6 | OsKitaake03g270700 |
| Deletion | Chr2 | 30095268 | 30095283 | 15 | |
| Deletion | Chr3 | 33288544 | 33288545 | 1 | |
| Deletion | Chr4 | 35271348 | 35271351 | 3 | |
| Deletion | Chr1 | 41578962 | 41578965 | 3 | |
| Deletion | Chr1 | 42634311 | 42634323 | 12 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr9 | 18747238 | 18747243 | 4 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 14165338 | 14242401 | 2 |
| Inversion | Chr9 | 14165347 | 14242408 | 2 |