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| Mutant Information |
|---|
| Mutant Name | FN4175-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4175-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 28490438 | T-G | Homo | INTERGENIC | |
| SBS | Chr2 | 5845593 | T-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g080700 |
| SBS | Chr2 | 24189242 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 31566077 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 31566078 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 19535507 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 20447901 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 11725135 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 21333011 | T-A | Hetero | UTR_3_PRIME | |
| SBS | Chr4 | 31034777 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 36328110 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 36630338 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 9652401 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 27519187 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 21272761 | A-G | Homo | INTRON | |
| SBS | Chr6 | 22268635 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 2620471 | T-C | Hetero | INTRON | |
| SBS | Chr7 | 14292074 | C-G | Homo | INTERGENIC | |
| SBS | Chr7 | 15656066 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 25444698 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 16641045 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 5397980 | T-C | Hetero | INTRON | |
| SBS | Chr9 | 7708705 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 9642777 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 3742708 | A-C | Homo | INTERGENIC | |
| SBS | Chr10 | 12673316 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 22616359 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 21872768 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 12189038 | C-T | Hetero | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 230973 | 230979 | 6 | |
| Deletion | Chr7 | 798789 | 798793 | 4 | |
| Deletion | Chr1 | 1176911 | 1176914 | 3 | |
| Deletion | Chr6 | 1477001 | 1502000 | 24999 | 5 |
| Deletion | Chr12 | 6202311 | 6202312 | 1 | |
| Deletion | Chr4 | 6847840 | 6847845 | 5 | |
| Deletion | Chr10 | 7713504 | 7713509 | 5 | |
| Deletion | Chr8 | 15096271 | 15096275 | 4 | OsKitaake08g117900 |
| Deletion | Chr3 | 17189693 | 17189700 | 7 | OsKitaake03g212900 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 25933910 | 25933913 | 2 | |
| Insertion | Chr2 | 26338357 | 26338362 | 4 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 17813479 | 17818145 | |
| Inversion | Chr5 | 17813492 | 17818234 |