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Mutant Information

Mutant Name	FN4177-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4177-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11328371 G-T Hetero INTERGENIC
SBS Chr1 15489215 G-A Hetero INTERGENIC
SBS Chr1 23542825 C-T Hetero INTERGENIC
SBS Chr1 28361290 T-C Hetero INTERGENIC
SBS Chr2 9812012 C-T Hetero INTERGENIC
SBS Chr2 15191499 A-G Hetero INTERGENIC
SBS Chr2 30445914 A-T Hetero INTRON
SBS Chr3 725027 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g011400
SBS Chr3 3156573 C-T Hetero INTERGENIC
SBS Chr3 5557315 C-G Homo INTERGENIC
SBS Chr3 17582453 T-C Hetero INTERGENIC
SBS Chr3 17765134 G-A Hetero INTERGENIC
SBS Chr3 29403629 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g307000
SBS Chr4 3880219 A-T Hetero INTERGENIC
SBS Chr4 4568182 G-A Hetero INTERGENIC
SBS Chr4 6121589 C-T Hetero INTERGENIC
SBS Chr4 14778957 G-A Hetero INTERGENIC
SBS Chr4 25762508 G-A Hetero SYNONYMOUS_CODING
SBS Chr4 31017206 T-C Hetero SYNONYMOUS_CODING
SBS Chr5 6949408 G-T Hetero INTERGENIC
SBS Chr5 9702222 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake05g088800
SBS Chr5 10066993 G-T Hetero INTERGENIC
SBS Chr5 10767507 G-A Hetero INTERGENIC
SBS Chr5 11237158 C-T Hetero INTERGENIC
SBS Chr5 22640086 A-G Hetero INTRON
SBS Chr5 24082604 G-T Hetero INTERGENIC
SBS Chr5 24342758 G-A Hetero INTERGENIC
SBS Chr5 24342759 G-A Hetero INTERGENIC
SBS Chr5 27079201 C-T Hetero UTR_5_PRIME
SBS Chr7 7760358 A-T Hetero INTERGENIC
SBS Chr7 9196874 T-A Hetero INTERGENIC
SBS Chr7 16371590 C-A Hetero INTERGENIC
SBS Chr7 29424150 C-T Hetero INTERGENIC
SBS Chr8 2316900 C-T Homo INTERGENIC
SBS Chr8 20244562 G-T Homo INTERGENIC
SBS Chr9 3479437 C-T Hetero INTERGENIC
SBS Chr9 21657875 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g190400
SBS Chr10 19799726 G-A Homo INTERGENIC
SBS Chr11 7917047 T-A Hetero INTRON
SBS Chr11 16322005 A-G Hetero INTERGENIC
SBS Chr12 17608410 C-T Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 10349250 10349377 127
Deletion Chr2 10859279 10859286 7 OsKitaake02g127200
Deletion Chr4 13257046 13257051 5
Deletion Chr8 15138728 15138730 2 OsKitaake08g118400
Deletion Chr10 23165776 23165777 1
Deletion Chr8 23523976 23523982 6
Deletion Chr3 25002590 25002598 8 OsKitaake03g265600
Deletion Chr11 25947001 25985000 37999 7
Deletion Chr5 30167792 30167793 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 2142010 2142013 2
Insertion Chr2 29830062 29830065 2
Insertion Chr3 30152184 30152187 2
Insertion Chr6 26228257 26228260 2
Insertion Chr12 18898375 18898378 2
Insertion Chr4 8898522 8898524 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 30871076 31101056

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11328371	G-T	Hetero	INTERGENIC
SBS	Chr1	15489215	G-A	Hetero	INTERGENIC
SBS	Chr1	23542825	C-T	Hetero	INTERGENIC
SBS	Chr1	28361290	T-C	Hetero	INTERGENIC
SBS	Chr2	9812012	C-T	Hetero	INTERGENIC
SBS	Chr2	15191499	A-G	Hetero	INTERGENIC
SBS	Chr2	30445914	A-T	Hetero	INTRON
SBS	Chr3	725027	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g011400
SBS	Chr3	3156573	C-T	Hetero	INTERGENIC
SBS	Chr3	5557315	C-G	Homo	INTERGENIC
SBS	Chr3	17582453	T-C	Hetero	INTERGENIC
SBS	Chr3	17765134	G-A	Hetero	INTERGENIC
SBS	Chr3	29403629	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g307000
SBS	Chr4	3880219	A-T	Hetero	INTERGENIC
SBS	Chr4	4568182	G-A	Hetero	INTERGENIC
SBS	Chr4	6121589	C-T	Hetero	INTERGENIC
SBS	Chr4	14778957	G-A	Hetero	INTERGENIC
SBS	Chr4	25762508	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	31017206	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr5	6949408	G-T	Hetero	INTERGENIC
SBS	Chr5	9702222	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g088800
SBS	Chr5	10066993	G-T	Hetero	INTERGENIC
SBS	Chr5	10767507	G-A	Hetero	INTERGENIC
SBS	Chr5	11237158	C-T	Hetero	INTERGENIC
SBS	Chr5	22640086	A-G	Hetero	INTRON
SBS	Chr5	24082604	G-T	Hetero	INTERGENIC
SBS	Chr5	24342758	G-A	Hetero	INTERGENIC
SBS	Chr5	24342759	G-A	Hetero	INTERGENIC
SBS	Chr5	27079201	C-T	Hetero	UTR_5_PRIME
SBS	Chr7	7760358	A-T	Hetero	INTERGENIC
SBS	Chr7	9196874	T-A	Hetero	INTERGENIC
SBS	Chr7	16371590	C-A	Hetero	INTERGENIC
SBS	Chr7	29424150	C-T	Hetero	INTERGENIC
SBS	Chr8	2316900	C-T	Homo	INTERGENIC
SBS	Chr8	20244562	G-T	Homo	INTERGENIC
SBS	Chr9	3479437	C-T	Hetero	INTERGENIC
SBS	Chr9	21657875	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g190400
SBS	Chr10	19799726	G-A	Homo	INTERGENIC
SBS	Chr11	7917047	T-A	Hetero	INTRON
SBS	Chr11	16322005	A-G	Hetero	INTERGENIC
SBS	Chr12	17608410	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	10349250	10349377	127
Deletion	Chr2	10859279	10859286	7	OsKitaake02g127200
Deletion	Chr4	13257046	13257051	5
Deletion	Chr8	15138728	15138730	2	OsKitaake08g118400
Deletion	Chr10	23165776	23165777	1
Deletion	Chr8	23523976	23523982	6
Deletion	Chr3	25002590	25002598	8	OsKitaake03g265600
Deletion	Chr11	25947001	25985000	37999	7
Deletion	Chr5	30167792	30167793	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	30871076	31101056

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes