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Mutant Information

Mutant Name	FN4178-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4178-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 38635060 A-T Hetero INTERGENIC
SBS Chr2 22602166 T-A Homo INTERGENIC
SBS Chr2 28806519 G-A Homo INTERGENIC
SBS Chr3 8394386 A-G Hetero INTERGENIC
SBS Chr3 33411714 T-A Homo INTERGENIC
SBS Chr4 1197238 C-T Hetero INTERGENIC
SBS Chr4 4094835 G-A Homo INTERGENIC
SBS Chr4 12549951 G-A Hetero INTERGENIC
SBS Chr5 602868 G-A Hetero INTERGENIC
SBS Chr5 4403423 A-G Hetero SYNONYMOUS_CODING
SBS Chr5 17512529 A-G Hetero INTERGENIC
SBS Chr5 23560281 C-A Hetero INTERGENIC
SBS Chr6 2815820 G-A Homo INTRON
SBS Chr6 28353688 C-T Hetero SYNONYMOUS_CODING
SBS Chr8 16043074 C-T Hetero INTERGENIC
SBS Chr8 23322092 T-A Homo INTERGENIC
SBS Chr9 5119481 A-G Hetero INTERGENIC
SBS Chr10 16963972 T-C Hetero INTERGENIC
SBS Chr11 2192578 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake11g032000
SBS Chr11 25005378 C-T Hetero INTERGENIC
SBS Chr12 13354931 G-A Homo INTERGENIC
SBS Chr12 19258904 A-G Homo NON_SYNONYMOUS_CODING OsKitaake12g144000

Deletions: 26

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1505024 1505026 2
Deletion Chr9 3173112 3173113 1
Deletion Chr4 4786691 4786694 3
Deletion Chr9 5064333 5064338 5
Deletion Chr4 6791765 6791782 17
Deletion Chr7 8443385 8443391 6
Deletion Chr2 8818189 8818197 8
Deletion Chr7 9342001 9458000 115999 3
Deletion Chr4 9364480 9364481 1
Deletion Chr10 9424337 9424340 3
Deletion Chr4 10469916 10469919 3
Deletion Chr6 10479974 10479981 7
Deletion Chr2 12688696 12688699 3
Deletion Chr12 13072576 13072579 3
Deletion Chr1 13357155 13357157 2
Deletion Chr1 13818188 13818189 1
Deletion Chr5 13902588 13902590 2
Deletion Chr12 14332561 14332563 2
Deletion Chr11 15325205 15325207 2
Deletion Chr10 21648001 21895000 246999 39
Deletion Chr6 23973244 23973251 7
Deletion Chr5 24626178 24626181 3
Deletion Chr3 27279254 27279255 1
Deletion Chr8 28859499 28859500 1
Deletion Chr3 30113045 30113049 4
Deletion Chr1 39828289 39828294 5

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 23541848 23541855 6
Insertion Chr2 17642860 17642863 2 OsKitaake02g176900
Insertion Chr5 998401 998403 1
Insertion Chr6 1259154 1259157 2
Insertion Chr10 20246017 20246020 2
Insertion Chr12 19120522 19120525 2
Insertion Chr4 9496147 9496149 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 8416390 9342271 OsKitaake07g091350

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	38635060	A-T	Hetero	INTERGENIC
SBS	Chr2	22602166	T-A	Homo	INTERGENIC
SBS	Chr2	28806519	G-A	Homo	INTERGENIC
SBS	Chr3	8394386	A-G	Hetero	INTERGENIC
SBS	Chr3	33411714	T-A	Homo	INTERGENIC
SBS	Chr4	1197238	C-T	Hetero	INTERGENIC
SBS	Chr4	4094835	G-A	Homo	INTERGENIC
SBS	Chr4	12549951	G-A	Hetero	INTERGENIC
SBS	Chr5	602868	G-A	Hetero	INTERGENIC
SBS	Chr5	4403423	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr5	17512529	A-G	Hetero	INTERGENIC
SBS	Chr5	23560281	C-A	Hetero	INTERGENIC
SBS	Chr6	2815820	G-A	Homo	INTRON
SBS	Chr6	28353688	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr8	16043074	C-T	Hetero	INTERGENIC
SBS	Chr8	23322092	T-A	Homo	INTERGENIC
SBS	Chr9	5119481	A-G	Hetero	INTERGENIC
SBS	Chr10	16963972	T-C	Hetero	INTERGENIC
SBS	Chr11	2192578	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g032000
SBS	Chr11	25005378	C-T	Hetero	INTERGENIC
SBS	Chr12	13354931	G-A	Homo	INTERGENIC
SBS	Chr12	19258904	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g144000

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1505024	1505026	2
Deletion	Chr9	3173112	3173113	1
Deletion	Chr4	4786691	4786694	3
Deletion	Chr9	5064333	5064338	5
Deletion	Chr4	6791765	6791782	17
Deletion	Chr7	8443385	8443391	6
Deletion	Chr2	8818189	8818197	8
Deletion	Chr7	9342001	9458000	115999	3
Deletion	Chr4	9364480	9364481	1
Deletion	Chr10	9424337	9424340	3
Deletion	Chr4	10469916	10469919	3
Deletion	Chr6	10479974	10479981	7
Deletion	Chr2	12688696	12688699	3
Deletion	Chr12	13072576	13072579	3
Deletion	Chr1	13357155	13357157	2
Deletion	Chr1	13818188	13818189	1
Deletion	Chr5	13902588	13902590	2
Deletion	Chr12	14332561	14332563	2
Deletion	Chr11	15325205	15325207	2
Deletion	Chr10	21648001	21895000	246999	39
Deletion	Chr6	23973244	23973251	7
Deletion	Chr5	24626178	24626181	3
Deletion	Chr3	27279254	27279255	1
Deletion	Chr8	28859499	28859500	1
Deletion	Chr3	30113045	30113049	4
Deletion	Chr1	39828289	39828294	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	8416390	9342271	OsKitaake07g091350

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes