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Mutant Information

Mutant Name	FN4179-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4179-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 8793342 C-A Hetero INTERGENIC
SBS Chr2 22009056 T-A Homo INTRON
SBS Chr3 19070436 G-A Homo INTERGENIC
SBS Chr3 19182231 T-A Homo INTERGENIC
SBS Chr4 5594513 G-A Homo INTERGENIC
SBS Chr4 8072938 A-T Hetero INTERGENIC
SBS Chr4 15533201 G-A Homo INTERGENIC
SBS Chr4 17871535 G-C Hetero INTERGENIC
SBS Chr4 30087447 G-T Homo INTERGENIC
SBS Chr4 34901981 G-A Homo INTRON
SBS Chr5 5972335 G-A Hetero INTERGENIC
SBS Chr5 10592555 G-C Hetero INTRON
SBS Chr6 9686283 G-A Homo INTERGENIC
SBS Chr6 26583110 A-C Hetero INTERGENIC
SBS Chr7 9207661 T-A Hetero INTRON
SBS Chr7 14870382 C-T Hetero INTERGENIC
SBS Chr7 18733565 G-T Hetero STOP_GAINED OsKitaake07g152600
SBS Chr7 18733566 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake07g152600
SBS Chr7 25220641 G-A Homo INTERGENIC
SBS Chr8 6629797 G-A Hetero INTERGENIC
SBS Chr8 11788171 C-T Hetero INTERGENIC
SBS Chr8 21355845 C-G Homo UTR_5_PRIME
SBS Chr9 4366332 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g024201
SBS Chr9 6104342 C-T Hetero INTERGENIC
SBS Chr9 8550903 T-C Hetero INTERGENIC
SBS Chr9 9613963 G-A Hetero INTERGENIC
SBS Chr9 10926206 C-A Hetero INTERGENIC
SBS Chr9 21991292 A-C Hetero SPLICE_SITE_REGION
SBS Chr9 21991296 A-C Hetero SPLICE_SITE_REGION
SBS Chr11 4721081 G-A Hetero INTERGENIC
SBS Chr11 4721082 G-A Hetero INTERGENIC
SBS Chr11 4856847 G-C Hetero UTR_5_PRIME
SBS Chr12 8425309 A-T Hetero INTRON
SBS Chr12 19440902 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g145600

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 444374 444378 4
Deletion Chr2 5536882 5536885 3
Deletion Chr2 5571929 5571934 5
Deletion Chr2 7400159 7400160 1
Deletion Chr5 7616648 7616650 2
Deletion Chr9 7747256 7747258 2 OsKitaake09g043800
Deletion Chr8 8084729 8084738 9
Deletion Chr3 8439182 8439187 5
Deletion Chr6 9652987 9652990 3
Deletion Chr6 9995807 9995814 7
Deletion Chr10 10208191 10208196 5
Deletion Chr4 16268988 16268999 11
Deletion Chr1 20832643 20832655 12
Deletion Chr8 21350507 21350509 2
Deletion Chr2 22428834 22428844 10
Deletion Chr1 22903558 22903601 43
Deletion Chr11 28132078 28132094 16
Deletion Chr1 33780704 33780714 10
Deletion Chr1 35525239 35525243 4
Deletion Chr1 39279001 39300000 20999 3
Deletion Chr1 39310001 39360000 49999 12

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 23355941 23355944 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	8793342	C-A	Hetero	INTERGENIC
SBS	Chr2	22009056	T-A	Homo	INTRON
SBS	Chr3	19070436	G-A	Homo	INTERGENIC
SBS	Chr3	19182231	T-A	Homo	INTERGENIC
SBS	Chr4	5594513	G-A	Homo	INTERGENIC
SBS	Chr4	8072938	A-T	Hetero	INTERGENIC
SBS	Chr4	15533201	G-A	Homo	INTERGENIC
SBS	Chr4	17871535	G-C	Hetero	INTERGENIC
SBS	Chr4	30087447	G-T	Homo	INTERGENIC
SBS	Chr4	34901981	G-A	Homo	INTRON
SBS	Chr5	5972335	G-A	Hetero	INTERGENIC
SBS	Chr5	10592555	G-C	Hetero	INTRON
SBS	Chr6	9686283	G-A	Homo	INTERGENIC
SBS	Chr6	26583110	A-C	Hetero	INTERGENIC
SBS	Chr7	9207661	T-A	Hetero	INTRON
SBS	Chr7	14870382	C-T	Hetero	INTERGENIC
SBS	Chr7	18733565	G-T	Hetero	STOP_GAINED	OsKitaake07g152600
SBS	Chr7	18733566	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g152600
SBS	Chr7	25220641	G-A	Homo	INTERGENIC
SBS	Chr8	6629797	G-A	Hetero	INTERGENIC
SBS	Chr8	11788171	C-T	Hetero	INTERGENIC
SBS	Chr8	21355845	C-G	Homo	UTR_5_PRIME
SBS	Chr9	4366332	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g024201
SBS	Chr9	6104342	C-T	Hetero	INTERGENIC
SBS	Chr9	8550903	T-C	Hetero	INTERGENIC
SBS	Chr9	9613963	G-A	Hetero	INTERGENIC
SBS	Chr9	10926206	C-A	Hetero	INTERGENIC
SBS	Chr9	21991292	A-C	Hetero	SPLICE_SITE_REGION
SBS	Chr9	21991296	A-C	Hetero	SPLICE_SITE_REGION
SBS	Chr11	4721081	G-A	Hetero	INTERGENIC
SBS	Chr11	4721082	G-A	Hetero	INTERGENIC
SBS	Chr11	4856847	G-C	Hetero	UTR_5_PRIME
SBS	Chr12	8425309	A-T	Hetero	INTRON
SBS	Chr12	19440902	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g145600

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	444374	444378	4
Deletion	Chr2	5536882	5536885	3
Deletion	Chr2	5571929	5571934	5
Deletion	Chr2	7400159	7400160	1
Deletion	Chr5	7616648	7616650	2
Deletion	Chr9	7747256	7747258	2	OsKitaake09g043800
Deletion	Chr8	8084729	8084738	9
Deletion	Chr3	8439182	8439187	5
Deletion	Chr6	9652987	9652990	3
Deletion	Chr6	9995807	9995814	7
Deletion	Chr10	10208191	10208196	5
Deletion	Chr4	16268988	16268999	11
Deletion	Chr1	20832643	20832655	12
Deletion	Chr8	21350507	21350509	2
Deletion	Chr2	22428834	22428844	10
Deletion	Chr1	22903558	22903601	43
Deletion	Chr11	28132078	28132094	16
Deletion	Chr1	33780704	33780714	10
Deletion	Chr1	35525239	35525243	4
Deletion	Chr1	39279001	39300000	20999	3
Deletion	Chr1	39310001	39360000	49999	12

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes