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Mutant Information

Mutant Name	FN418-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN418-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3587002 C-T Hetero INTERGENIC
SBS Chr1 3717961 G-C Homo INTERGENIC
SBS Chr1 37681855 C-T Homo INTERGENIC
SBS Chr2 3343977 G-A Hetero INTERGENIC
SBS Chr2 14579158 T-A Homo INTERGENIC
SBS Chr2 14579159 C-A Homo INTERGENIC
SBS Chr2 25143196 G-A Hetero INTERGENIC
SBS Chr3 16028093 C-T Hetero INTERGENIC
SBS Chr3 17602383 G-T Hetero INTERGENIC
SBS Chr3 17847527 G-A Hetero INTERGENIC
SBS Chr3 21639469 A-G Hetero INTERGENIC
SBS Chr3 26730588 G-T Hetero INTERGENIC
SBS Chr3 33174709 G-A Hetero INTRON
SBS Chr4 1661374 C-G Homo INTERGENIC
SBS Chr4 3079783 A-G Hetero INTERGENIC
SBS Chr4 25002724 C-A Homo INTERGENIC
SBS Chr4 30251383 C-A Homo INTERGENIC
SBS Chr4 33348113 C-G Hetero UTR_5_PRIME
SBS Chr5 8872835 T-C Hetero INTERGENIC
SBS Chr5 19145576 G-T Homo INTERGENIC
SBS Chr6 13855369 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g144400
SBS Chr6 15580501 G-A Hetero INTERGENIC
SBS Chr6 27543730 G-T Hetero INTERGENIC
SBS Chr6 27834236 A-G Hetero INTERGENIC
SBS Chr7 16119497 C-T Homo INTERGENIC
SBS Chr7 18311417 T-G Hetero UTR_3_PRIME
SBS Chr7 20695164 G-T Hetero INTRON
SBS Chr7 26791686 T-A Homo INTERGENIC
SBS Chr8 28986324 C-T Hetero INTERGENIC
SBS Chr9 15045098 T-A Homo INTRON
SBS Chr9 19895000 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake09g165600
SBS Chr10 897491 G-A Hetero INTERGENIC
SBS Chr10 5261154 C-A Homo INTERGENIC
SBS Chr10 8496307 T-C Hetero INTERGENIC
SBS Chr10 14950745 C-A Hetero INTERGENIC
SBS Chr10 15095215 C-T Hetero INTERGENIC
SBS Chr10 20333691 A-G Hetero INTERGENIC
SBS Chr11 8945387 G-A Hetero INTERGENIC
SBS Chr11 9717763 C-T Hetero INTERGENIC
SBS Chr11 18480963 A-G Homo UTR_3_PRIME
SBS Chr11 28281368 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g232200
SBS Chr12 9906355 C-T Hetero INTERGENIC
SBS Chr12 12750506 G-A Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 3303891 3303892 1
Deletion Chr9 5650581 5650583 2
Deletion Chr2 7707238 7707251 13 OsKitaake02g100800
Deletion Chr1 10106297 10106300 3
Deletion Chr7 14793968 14793969 1
Deletion Chr9 15007927 15007932 5
Deletion Chr9 15656901 15656902 1
Deletion Chr12 22774832 22774915 83
Deletion Chr2 25057569 25057571 2
Deletion Chr1 43747753 43747766 13

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 5595456 5595459 2
Insertion Chr10 10454787 10454790 2
Insertion Chr12 19750103 19750106 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 16660873 16817962

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 18912307 Chr3 26675200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3587002	C-T	Hetero	INTERGENIC
SBS	Chr1	3717961	G-C	Homo	INTERGENIC
SBS	Chr1	37681855	C-T	Homo	INTERGENIC
SBS	Chr2	3343977	G-A	Hetero	INTERGENIC
SBS	Chr2	14579158	T-A	Homo	INTERGENIC
SBS	Chr2	14579159	C-A	Homo	INTERGENIC
SBS	Chr2	25143196	G-A	Hetero	INTERGENIC
SBS	Chr3	16028093	C-T	Hetero	INTERGENIC
SBS	Chr3	17602383	G-T	Hetero	INTERGENIC
SBS	Chr3	17847527	G-A	Hetero	INTERGENIC
SBS	Chr3	21639469	A-G	Hetero	INTERGENIC
SBS	Chr3	26730588	G-T	Hetero	INTERGENIC
SBS	Chr3	33174709	G-A	Hetero	INTRON
SBS	Chr4	1661374	C-G	Homo	INTERGENIC
SBS	Chr4	3079783	A-G	Hetero	INTERGENIC
SBS	Chr4	25002724	C-A	Homo	INTERGENIC
SBS	Chr4	30251383	C-A	Homo	INTERGENIC
SBS	Chr4	33348113	C-G	Hetero	UTR_5_PRIME
SBS	Chr5	8872835	T-C	Hetero	INTERGENIC
SBS	Chr5	19145576	G-T	Homo	INTERGENIC
SBS	Chr6	13855369	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g144400
SBS	Chr6	15580501	G-A	Hetero	INTERGENIC
SBS	Chr6	27543730	G-T	Hetero	INTERGENIC
SBS	Chr6	27834236	A-G	Hetero	INTERGENIC
SBS	Chr7	16119497	C-T	Homo	INTERGENIC
SBS	Chr7	18311417	T-G	Hetero	UTR_3_PRIME
SBS	Chr7	20695164	G-T	Hetero	INTRON
SBS	Chr7	26791686	T-A	Homo	INTERGENIC
SBS	Chr8	28986324	C-T	Hetero	INTERGENIC
SBS	Chr9	15045098	T-A	Homo	INTRON
SBS	Chr9	19895000	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g165600
SBS	Chr10	897491	G-A	Hetero	INTERGENIC
SBS	Chr10	5261154	C-A	Homo	INTERGENIC
SBS	Chr10	8496307	T-C	Hetero	INTERGENIC
SBS	Chr10	14950745	C-A	Hetero	INTERGENIC
SBS	Chr10	15095215	C-T	Hetero	INTERGENIC
SBS	Chr10	20333691	A-G	Hetero	INTERGENIC
SBS	Chr11	8945387	G-A	Hetero	INTERGENIC
SBS	Chr11	9717763	C-T	Hetero	INTERGENIC
SBS	Chr11	18480963	A-G	Homo	UTR_3_PRIME
SBS	Chr11	28281368	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g232200
SBS	Chr12	9906355	C-T	Hetero	INTERGENIC
SBS	Chr12	12750506	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	3303891	3303892	1
Deletion	Chr9	5650581	5650583	2
Deletion	Chr2	7707238	7707251	13	OsKitaake02g100800
Deletion	Chr1	10106297	10106300	3
Deletion	Chr7	14793968	14793969	1
Deletion	Chr9	15007927	15007932	5
Deletion	Chr9	15656901	15656902	1
Deletion	Chr12	22774832	22774915	83
Deletion	Chr2	25057569	25057571	2
Deletion	Chr1	43747753	43747766	13

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	16660873	16817962

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes