Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN4180-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4180-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 23
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr2 | 10347147 | A-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g123400 |
| SBS | Chr3 | 15859343 | C-A | Homo | INTERGENIC | |
| SBS | Chr3 | 29835426 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 18840046 | C-A | Hetero | INTRON | |
| SBS | Chr5 | 24946940 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 27692869 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 28688161 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 29887671 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g286400 |
| SBS | Chr6 | 4007752 | G-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 21085043 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 26185170 | C-T | Hetero | UTR_5_PRIME | |
| SBS | Chr6 | 26696152 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 30558786 | G-A | Hetero | INTRON | |
| SBS | Chr7 | 2583906 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 885849 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 9519643 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 24506656 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 24506657 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 10097503 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 2786835 | G-A | Homo | INTRON | |
| SBS | Chr11 | 21707166 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 26041482 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 7005743 | T-C | Hetero | INTRON |
Deletions: 8
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 6190424 | 6190425 | 1 | |
| Deletion | Chr10 | 17620974 | 17620983 | 9 | |
| Deletion | Chr3 | 17750376 | 17750388 | 12 | OsKitaake03g217800 |
| Deletion | Chr3 | 19008347 | 19008349 | 2 | |
| Deletion | Chr10 | 21437001 | 21446000 | 8999 | OsKitaake10g170200 |
| Deletion | Chr11 | 23715616 | 23715624 | 8 | |
| Deletion | Chr4 | 31778575 | 31778576 | 1 | |
| Deletion | Chr2 | 35404325 | 35404326 | 1 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 22372226 | 22372230 | 3 | |
| Insertion | Chr6 | 86438 | 86441 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 17390886 | 17701230 |