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| Mutant Information |
|---|
| Mutant Name | FN4181-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4181-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 24
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8577400 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g107300 |
| SBS | Chr1 | 30474596 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g301300 |
| SBS | Chr1 | 31764950 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 1324372 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 2917705 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 28888979 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 14528861 | C-A | Homo | INTRON | |
| SBS | Chr3 | 14528862 | T-G | Homo | INTRON | |
| SBS | Chr3 | 33217328 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 35693058 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 16595439 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 26926791 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 6314001 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 9089695 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g109200 |
| SBS | Chr6 | 18067073 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 18441807 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 8349770 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g090850 |
| SBS | Chr7 | 9612697 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 16061218 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 8182164 | A-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 22022806 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 26591451 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 22549064 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 23711478 | G-A | Homo | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 6484309 | 6484310 | 1 | |
| Deletion | Chr7 | 6535678 | 6535681 | 3 | OsKitaake07g075400 |
| Deletion | Chr5 | 7123095 | 7123097 | 2 | |
| Deletion | Chr3 | 7425813 | 7425817 | 4 | |
| Deletion | Chr6 | 7489307 | 7489308 | 1 | |
| Deletion | Chr10 | 7509001 | 7560000 | 50999 | OsKitaake10g048800 |
| Deletion | Chr1 | 10983735 | 10983747 | 12 | |
| Deletion | Chr2 | 16774747 | 16774757 | 10 | |
| Deletion | Chr4 | 17574001 | 17586000 | 11999 | OsKitaake04g087800 |
| Deletion | Chr12 | 20560410 | 20560420 | 10 | |
| Deletion | Chr5 | 23235360 | 23235367 | 7 | OsKitaake05g194200 |
| Deletion | Chr2 | 26742012 | 26742018 | 6 | |
| Deletion | Chr2 | 27098235 | 27098250 | 15 | OsKitaake02g270500 |
| Deletion | Chr11 | 27577680 | 27577684 | 4 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr9 | 7509151 | 7509154 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 27268034 | 27468234 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 18650839 | Chr1 | 21406693 | |
| Translocation | Chr12 | 18651501 | Chr1 | 21406680 | |
| Translocation | Chr2 | 33525281 | Chr1 | 42208533 | 2 |
| Translocation | Chr2 | 33525299 | Chr1 | 42208027 | 2 |