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| Mutant Information |
|---|
| Mutant Name | FN4182-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4182-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 17
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr2 | 6394301 | C-G | Homo | INTERGENIC | |
| SBS | Chr2 | 31130286 | A-C | Hetero | UTR_5_PRIME | |
| SBS | Chr2 | 35774091 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 7116007 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 11670734 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 17626685 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 9067647 | C-A | Hetero | INTRON | |
| SBS | Chr5 | 16709185 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake05g127900 |
| SBS | Chr5 | 17367901 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 17384737 | A-T | Homo | INTRON | |
| SBS | Chr5 | 28110285 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 16722261 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g157900 |
| SBS | Chr7 | 717606 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 4246709 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 139387 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 23924385 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr11 | 18589661 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g144000 |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 651842 | 651843 | 1 | |
| Deletion | Chr9 | 1796719 | 1796725 | 6 | |
| Deletion | Chr9 | 3750307 | 3750310 | 3 | |
| Deletion | Chr10 | 5135594 | 5135596 | 2 | |
| Deletion | Chr11 | 5195252 | 5195255 | 3 | OsKitaake11g065301 |
| Deletion | Chr9 | 5221215 | 5221220 | 5 | |
| Deletion | Chr6 | 9807874 | 9807878 | 4 | |
| Deletion | Chr4 | 10335753 | 10335754 | 1 | |
| Deletion | Chr3 | 10747220 | 10747222 | 2 | |
| Deletion | Chr2 | 12178595 | 12178599 | 4 | |
| Deletion | Chr6 | 17767903 | 17767904 | 1 | |
| Deletion | Chr3 | 20969034 | 20969047 | 13 | |
| Deletion | Chr12 | 27112815 | 27112819 | 4 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 12224660 | 12224663 | 2 | |
| Insertion | Chr6 | 8146756 | 8146759 | 2 | |
| Insertion | Chr10 | 1175187 | 1175190 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 184333 | 188360 | OsKitaake10g001150 |
| Inversion | Chr10 | 184423 | 185826 | OsKitaake10g001150 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 13041735 | Chr4 | 34565066 | OsKitaake04g288300 |
| Translocation | Chr6 | 13042259 | Chr4 | 34565067 | OsKitaake04g288300 |