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Mutant Information

Mutant Name	FN4183-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4183-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1154830 C-T Homo INTERGENIC
SBS Chr1 7148848 T-A Hetero INTERGENIC
SBS Chr1 10403792 C-T Hetero INTERGENIC
SBS Chr1 22997053 T-G Hetero UTR_3_PRIME
SBS Chr1 32065718 G-A Hetero INTERGENIC
SBS Chr1 41782865 A-G Hetero INTRON
SBS Chr1 43625673 A-T Homo INTERGENIC
SBS Chr2 3302127 T-C Hetero INTRON
SBS Chr2 14524519 G-T Homo INTERGENIC
SBS Chr2 16646810 G-A Hetero INTERGENIC
SBS Chr2 22499004 A-T Hetero INTERGENIC
SBS Chr2 22548064 T-C Hetero INTERGENIC
SBS Chr2 26140022 A-T Hetero UTR_3_PRIME
SBS Chr3 5737230 A-G Hetero INTERGENIC
SBS Chr3 6512022 A-G Hetero INTRON
SBS Chr3 14442370 A-G Hetero INTERGENIC
SBS Chr3 20942058 T-A Hetero INTERGENIC
SBS Chr4 2883475 A-T Hetero INTERGENIC
SBS Chr4 14074651 C-T Homo INTERGENIC
SBS Chr4 20163989 T-A Hetero INTERGENIC
SBS Chr4 28372581 G-A Hetero INTERGENIC
SBS Chr4 30316326 C-T Hetero INTERGENIC
SBS Chr5 23083207 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake05g192000
SBS Chr5 25277216 G-A Hetero INTERGENIC
SBS Chr6 9594559 A-G Hetero INTRON
SBS Chr6 9938782 G-C Hetero INTERGENIC
SBS Chr6 10843597 T-C Hetero INTERGENIC
SBS Chr6 12889648 C-T Hetero INTERGENIC
SBS Chr6 16591306 C-A Hetero INTERGENIC
SBS Chr7 8860165 C-G Hetero INTERGENIC
SBS Chr7 10328580 C-T Hetero INTERGENIC
SBS Chr7 11614253 C-A Hetero INTERGENIC
SBS Chr7 16247346 A-T Hetero INTRON
SBS Chr7 21180123 G-C Homo INTERGENIC
SBS Chr8 10224834 G-T Homo INTERGENIC
SBS Chr9 3472634 G-A Hetero INTERGENIC
SBS Chr10 6683996 A-G Hetero INTERGENIC
SBS Chr10 6897807 G-T Hetero INTERGENIC
SBS Chr10 10803358 C-A Hetero INTERGENIC
SBS Chr10 16203774 G-A Hetero INTERGENIC
SBS Chr10 22595227 C-T Hetero INTERGENIC
SBS Chr11 23924937 G-A Hetero INTERGENIC
SBS Chr11 25470985 G-A Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 993319 993327 8
Deletion Chr12 1648198 1648201 3
Deletion Chr4 4830806 4830807 1
Deletion Chr3 11735022 11735026 4
Deletion Chr10 12991001 13027000 35999
Deletion Chr6 13305174 13305175 1 OsKitaake06g140600
Deletion Chr2 14260194 14260195 1
Deletion Chr7 16361472 16361477 5
Deletion Chr9 16666729 16666730 1
Deletion Chr9 16700537 16700564 27
Deletion Chr2 18667657 18667663 6
Deletion Chr6 21374833 21374835 2
Deletion Chr10 22227762 22227763 1
Deletion Chr7 23765084 23765094 10
Deletion Chr6 26348255 26348256 1
Deletion Chr5 27686336 27686337 1
Deletion Chr4 28210899 28210905 6
Deletion Chr5 29489572 29489586 14
Deletion Chr1 43820685 43820693 8

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 16861179 16861182 2
Insertion Chr3 1391541 1391544 2
Insertion Chr6 11200865 11200886 20
Insertion Chr12 23333501 23333506 4

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 7786501 8307533
Inversion Chr2 8269883 8307523
Inversion Chr12 11832412 12586672
Inversion Chr12 11832417 12586672

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 78999 Chr2 21028882 OsKitaake12g000900
Translocation Chr11 19432997 Chr2 16751719 OsKitaake02g171200
Translocation Chr11 19433001 Chr2 16749270 OsKitaake02g171200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1154830	C-T	Homo	INTERGENIC
SBS	Chr1	7148848	T-A	Hetero	INTERGENIC
SBS	Chr1	10403792	C-T	Hetero	INTERGENIC
SBS	Chr1	22997053	T-G	Hetero	UTR_3_PRIME
SBS	Chr1	32065718	G-A	Hetero	INTERGENIC
SBS	Chr1	41782865	A-G	Hetero	INTRON
SBS	Chr1	43625673	A-T	Homo	INTERGENIC
SBS	Chr2	3302127	T-C	Hetero	INTRON
SBS	Chr2	14524519	G-T	Homo	INTERGENIC
SBS	Chr2	16646810	G-A	Hetero	INTERGENIC
SBS	Chr2	22499004	A-T	Hetero	INTERGENIC
SBS	Chr2	22548064	T-C	Hetero	INTERGENIC
SBS	Chr2	26140022	A-T	Hetero	UTR_3_PRIME
SBS	Chr3	5737230	A-G	Hetero	INTERGENIC
SBS	Chr3	6512022	A-G	Hetero	INTRON
SBS	Chr3	14442370	A-G	Hetero	INTERGENIC
SBS	Chr3	20942058	T-A	Hetero	INTERGENIC
SBS	Chr4	2883475	A-T	Hetero	INTERGENIC
SBS	Chr4	14074651	C-T	Homo	INTERGENIC
SBS	Chr4	20163989	T-A	Hetero	INTERGENIC
SBS	Chr4	28372581	G-A	Hetero	INTERGENIC
SBS	Chr4	30316326	C-T	Hetero	INTERGENIC
SBS	Chr5	23083207	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g192000
SBS	Chr5	25277216	G-A	Hetero	INTERGENIC
SBS	Chr6	9594559	A-G	Hetero	INTRON
SBS	Chr6	9938782	G-C	Hetero	INTERGENIC
SBS	Chr6	10843597	T-C	Hetero	INTERGENIC
SBS	Chr6	12889648	C-T	Hetero	INTERGENIC
SBS	Chr6	16591306	C-A	Hetero	INTERGENIC
SBS	Chr7	8860165	C-G	Hetero	INTERGENIC
SBS	Chr7	10328580	C-T	Hetero	INTERGENIC
SBS	Chr7	11614253	C-A	Hetero	INTERGENIC
SBS	Chr7	16247346	A-T	Hetero	INTRON
SBS	Chr7	21180123	G-C	Homo	INTERGENIC
SBS	Chr8	10224834	G-T	Homo	INTERGENIC
SBS	Chr9	3472634	G-A	Hetero	INTERGENIC
SBS	Chr10	6683996	A-G	Hetero	INTERGENIC
SBS	Chr10	6897807	G-T	Hetero	INTERGENIC
SBS	Chr10	10803358	C-A	Hetero	INTERGENIC
SBS	Chr10	16203774	G-A	Hetero	INTERGENIC
SBS	Chr10	22595227	C-T	Hetero	INTERGENIC
SBS	Chr11	23924937	G-A	Hetero	INTERGENIC
SBS	Chr11	25470985	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	993319	993327	8
Deletion	Chr12	1648198	1648201	3
Deletion	Chr4	4830806	4830807	1
Deletion	Chr3	11735022	11735026	4
Deletion	Chr10	12991001	13027000	35999
Deletion	Chr6	13305174	13305175	1	OsKitaake06g140600
Deletion	Chr2	14260194	14260195	1
Deletion	Chr7	16361472	16361477	5
Deletion	Chr9	16666729	16666730	1
Deletion	Chr9	16700537	16700564	27
Deletion	Chr2	18667657	18667663	6
Deletion	Chr6	21374833	21374835	2
Deletion	Chr10	22227762	22227763	1
Deletion	Chr7	23765084	23765094	10
Deletion	Chr6	26348255	26348256	1
Deletion	Chr5	27686336	27686337	1
Deletion	Chr4	28210899	28210905	6
Deletion	Chr5	29489572	29489586	14
Deletion	Chr1	43820685	43820693	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	7786501	8307533
Inversion	Chr2	8269883	8307523
Inversion	Chr12	11832412	12586672
Inversion	Chr12	11832417	12586672

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes