Search Kitaake

Mutant Information

Mutant Name	FN4184-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4184-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6781758 T-C Hetero INTERGENIC
SBS Chr2 6548736 G-C Homo INTERGENIC
SBS Chr2 16855541 G-T Hetero INTERGENIC
SBS Chr2 16855542 C-T Hetero INTERGENIC
SBS Chr2 31404138 G-C Hetero INTERGENIC
SBS Chr3 3879748 C-T Hetero INTERGENIC
SBS Chr3 8742753 G-A Hetero INTERGENIC
SBS Chr3 15920682 T-C Homo INTERGENIC
SBS Chr3 17686540 G-A Homo INTERGENIC
SBS Chr3 33275225 T-A Hetero INTERGENIC
SBS Chr4 14787654 G-A Hetero INTERGENIC
SBS Chr4 14787655 T-A Hetero INTERGENIC
SBS Chr4 16663995 C-T Hetero INTERGENIC
SBS Chr4 18753412 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g094000
SBS Chr4 20584409 G-A Homo INTRON
SBS Chr4 28672532 A-G Homo INTERGENIC
SBS Chr4 31161565 G-A Homo INTERGENIC
SBS Chr4 35887642 C-T Homo SYNONYMOUS_CODING
SBS Chr5 3195847 G-A Hetero UTR_5_PRIME
SBS Chr5 10606830 T-A Hetero INTRON
SBS Chr5 14343136 G-A Hetero UTR_3_PRIME
SBS Chr6 3621212 T-C Hetero INTRON
SBS Chr7 2894724 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g036800
SBS Chr7 2894725 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g036800
SBS Chr7 6153535 A-T Hetero INTERGENIC
SBS Chr7 26065753 A-G Hetero INTERGENIC
SBS Chr8 1163093 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g015401
SBS Chr8 24447531 G-A Hetero INTRON
SBS Chr8 24447547 G-A Hetero INTRON
SBS Chr8 26361117 A-G Hetero INTERGENIC
SBS Chr9 6384171 C-A Hetero INTERGENIC
SBS Chr9 14923646 C-T Hetero INTERGENIC
SBS Chr9 19040694 C-T Hetero INTERGENIC
SBS Chr9 22214669 T-C Hetero INTERGENIC
SBS Chr10 5282600 A-G Homo INTERGENIC
SBS Chr10 9512960 C-T Homo INTERGENIC
SBS Chr11 14298134 G-A Hetero INTRON
SBS Chr11 25259788 T-A Hetero INTERGENIC
SBS Chr11 26799502 A-G Hetero INTERGENIC
SBS Chr12 12020896 A-T Hetero INTERGENIC
SBS Chr12 13469793 T-C Homo INTERGENIC
SBS Chr12 14641488 G-A Homo INTERGENIC
SBS Chr12 17073631 C-T Hetero INTERGENIC
SBS Chr12 17961453 C-T Hetero INTERGENIC
SBS Chr12 18438165 G-A Homo INTERGENIC
SBS Chr12 21890688 C-T Hetero INTERGENIC
SBS Chr12 22676539 A-G Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 398522 398535 13
Deletion Chr6 4680001 4748000 67999 9
Deletion Chr12 7795296 7795297 1
Deletion Chr3 9461995 9461996 1
Deletion Chr12 12081349 12081358 9
Deletion Chr1 13252001 13270000 17999
Deletion Chr2 13617244 13617247 3
Deletion Chr8 18102832 18102843 11
Deletion Chr7 18221616 18221618 2 OsKitaake07g147300
Deletion Chr4 18633001 18653000 19999
Deletion Chr7 21964746 21964753 7
Deletion Chr1 26686415 26686416 1
Deletion Chr4 29202730 29202735 5
Deletion Chr1 43597642 43597651 9

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 19921126 19921129 2
Insertion Chr4 9890301 9890364 62

Inversions: 8

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 1984570 2896449 OsKitaake07g027000
Inversion Chr7 1984575 2896456 OsKitaake07g027000
Inversion Chr2 2927124 2958463 2
Inversion Chr2 2927137 2958468 2
Inversion Chr6 4751193 5106278 OsKitaake06g064400
Inversion Chr6 5106263 5179649 OsKitaake06g069466
Inversion Chr1 12583831 13253815
Inversion Chr1 12584136 13266786

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 3798121 Chr1 12583833
Translocation Chr8 3798144 Chr1 12584125

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6781758	T-C	Hetero	INTERGENIC
SBS	Chr2	6548736	G-C	Homo	INTERGENIC
SBS	Chr2	16855541	G-T	Hetero	INTERGENIC
SBS	Chr2	16855542	C-T	Hetero	INTERGENIC
SBS	Chr2	31404138	G-C	Hetero	INTERGENIC
SBS	Chr3	3879748	C-T	Hetero	INTERGENIC
SBS	Chr3	8742753	G-A	Hetero	INTERGENIC
SBS	Chr3	15920682	T-C	Homo	INTERGENIC
SBS	Chr3	17686540	G-A	Homo	INTERGENIC
SBS	Chr3	33275225	T-A	Hetero	INTERGENIC
SBS	Chr4	14787654	G-A	Hetero	INTERGENIC
SBS	Chr4	14787655	T-A	Hetero	INTERGENIC
SBS	Chr4	16663995	C-T	Hetero	INTERGENIC
SBS	Chr4	18753412	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g094000
SBS	Chr4	20584409	G-A	Homo	INTRON
SBS	Chr4	28672532	A-G	Homo	INTERGENIC
SBS	Chr4	31161565	G-A	Homo	INTERGENIC
SBS	Chr4	35887642	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr5	3195847	G-A	Hetero	UTR_5_PRIME
SBS	Chr5	10606830	T-A	Hetero	INTRON
SBS	Chr5	14343136	G-A	Hetero	UTR_3_PRIME
SBS	Chr6	3621212	T-C	Hetero	INTRON
SBS	Chr7	2894724	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g036800
SBS	Chr7	2894725	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g036800
SBS	Chr7	6153535	A-T	Hetero	INTERGENIC
SBS	Chr7	26065753	A-G	Hetero	INTERGENIC
SBS	Chr8	1163093	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g015401
SBS	Chr8	24447531	G-A	Hetero	INTRON
SBS	Chr8	24447547	G-A	Hetero	INTRON
SBS	Chr8	26361117	A-G	Hetero	INTERGENIC
SBS	Chr9	6384171	C-A	Hetero	INTERGENIC
SBS	Chr9	14923646	C-T	Hetero	INTERGENIC
SBS	Chr9	19040694	C-T	Hetero	INTERGENIC
SBS	Chr9	22214669	T-C	Hetero	INTERGENIC
SBS	Chr10	5282600	A-G	Homo	INTERGENIC
SBS	Chr10	9512960	C-T	Homo	INTERGENIC
SBS	Chr11	14298134	G-A	Hetero	INTRON
SBS	Chr11	25259788	T-A	Hetero	INTERGENIC
SBS	Chr11	26799502	A-G	Hetero	INTERGENIC
SBS	Chr12	12020896	A-T	Hetero	INTERGENIC
SBS	Chr12	13469793	T-C	Homo	INTERGENIC
SBS	Chr12	14641488	G-A	Homo	INTERGENIC
SBS	Chr12	17073631	C-T	Hetero	INTERGENIC
SBS	Chr12	17961453	C-T	Hetero	INTERGENIC
SBS	Chr12	18438165	G-A	Homo	INTERGENIC
SBS	Chr12	21890688	C-T	Hetero	INTERGENIC
SBS	Chr12	22676539	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	398522	398535	13
Deletion	Chr6	4680001	4748000	67999	9
Deletion	Chr12	7795296	7795297	1
Deletion	Chr3	9461995	9461996	1
Deletion	Chr12	12081349	12081358	9
Deletion	Chr1	13252001	13270000	17999
Deletion	Chr2	13617244	13617247	3
Deletion	Chr8	18102832	18102843	11
Deletion	Chr7	18221616	18221618	2	OsKitaake07g147300
Deletion	Chr4	18633001	18653000	19999
Deletion	Chr7	21964746	21964753	7
Deletion	Chr1	26686415	26686416	1
Deletion	Chr4	29202730	29202735	5
Deletion	Chr1	43597642	43597651	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	1984570	2896449	OsKitaake07g027000
Inversion	Chr7	1984575	2896456	OsKitaake07g027000
Inversion	Chr2	2927124	2958463	2
Inversion	Chr2	2927137	2958468	2
Inversion	Chr6	4751193	5106278	OsKitaake06g064400
Inversion	Chr6	5106263	5179649	OsKitaake06g069466
Inversion	Chr1	12583831	13253815
Inversion	Chr1	12584136	13266786

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes