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Mutant Information

Mutant Name	FN4185-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4185-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2245397 A-T Hetero INTERGENIC
SBS Chr1 2902860 C-A Homo INTRON
SBS Chr1 4661017 C-T Homo INTERGENIC
SBS Chr1 7931536 C-T Homo UTR_3_PRIME
SBS Chr1 8611543 C-A Homo INTERGENIC
SBS Chr1 30002288 G-A Homo INTERGENIC
SBS Chr2 695747 C-T Hetero INTERGENIC
SBS Chr2 4434363 T-G Homo INTRON
SBS Chr2 4434366 A-G Homo INTRON
SBS Chr2 5949575 A-T Homo INTERGENIC
SBS Chr2 11328039 C-G Homo INTERGENIC
SBS Chr2 19217664 C-T Homo INTERGENIC
SBS Chr2 21896018 C-A Hetero INTERGENIC
SBS Chr2 32251741 T-A Homo INTERGENIC
SBS Chr3 13418550 A-T Homo INTRON
SBS Chr3 18748961 C-A Homo INTERGENIC
SBS Chr3 28068930 C-T Hetero INTERGENIC
SBS Chr4 34011981 T-G Hetero INTERGENIC
SBS Chr5 446595 A-G Homo INTERGENIC
SBS Chr6 12933641 C-A Homo NON_SYNONYMOUS_CODING OsKitaake06g137400
SBS Chr6 27644798 T-C Hetero INTERGENIC
SBS Chr7 23706144 C-T Homo INTERGENIC
SBS Chr10 19137847 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g137900
SBS Chr11 10621589 G-A Hetero INTERGENIC
SBS Chr11 17003000 T-A Hetero INTRON
SBS Chr12 26304615 C-T Homo INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 4434671 4434677 6
Deletion Chr5 4699169 4699170 1
Deletion Chr1 4874084 4874086 2
Deletion Chr3 8180247 8180253 6
Deletion Chr7 8464411 8464484 73
Deletion Chr6 9011183 9011189 6
Deletion Chr6 14403212 14403214 2
Deletion Chr5 24744520 24744522 2 OsKitaake05g202700
Deletion Chr7 27918018 27918039 21
Deletion Chr2 33817123 33817125 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 6294616 6294619 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2245397	A-T	Hetero	INTERGENIC
SBS	Chr1	2902860	C-A	Homo	INTRON
SBS	Chr1	4661017	C-T	Homo	INTERGENIC
SBS	Chr1	7931536	C-T	Homo	UTR_3_PRIME
SBS	Chr1	8611543	C-A	Homo	INTERGENIC
SBS	Chr1	30002288	G-A	Homo	INTERGENIC
SBS	Chr2	695747	C-T	Hetero	INTERGENIC
SBS	Chr2	4434363	T-G	Homo	INTRON
SBS	Chr2	4434366	A-G	Homo	INTRON
SBS	Chr2	5949575	A-T	Homo	INTERGENIC
SBS	Chr2	11328039	C-G	Homo	INTERGENIC
SBS	Chr2	19217664	C-T	Homo	INTERGENIC
SBS	Chr2	21896018	C-A	Hetero	INTERGENIC
SBS	Chr2	32251741	T-A	Homo	INTERGENIC
SBS	Chr3	13418550	A-T	Homo	INTRON
SBS	Chr3	18748961	C-A	Homo	INTERGENIC
SBS	Chr3	28068930	C-T	Hetero	INTERGENIC
SBS	Chr4	34011981	T-G	Hetero	INTERGENIC
SBS	Chr5	446595	A-G	Homo	INTERGENIC
SBS	Chr6	12933641	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g137400
SBS	Chr6	27644798	T-C	Hetero	INTERGENIC
SBS	Chr7	23706144	C-T	Homo	INTERGENIC
SBS	Chr10	19137847	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g137900
SBS	Chr11	10621589	G-A	Hetero	INTERGENIC
SBS	Chr11	17003000	T-A	Hetero	INTRON
SBS	Chr12	26304615	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	4434671	4434677	6
Deletion	Chr5	4699169	4699170	1
Deletion	Chr1	4874084	4874086	2
Deletion	Chr3	8180247	8180253	6
Deletion	Chr7	8464411	8464484	73
Deletion	Chr6	9011183	9011189	6
Deletion	Chr6	14403212	14403214	2
Deletion	Chr5	24744520	24744522	2	OsKitaake05g202700
Deletion	Chr7	27918018	27918039	21
Deletion	Chr2	33817123	33817125	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes