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| Mutant Information |
|---|
| Mutant Name | FN4187-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4187-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 7851099 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 8474288 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 18987449 | C-T | Homo | INTRON | |
| SBS | Chr1 | 31143362 | C-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g310800 |
| SBS | Chr1 | 32222653 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 11628311 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 13610539 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 32357667 | T-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 33710909 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr3 | 26901820 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 28212288 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 28838093 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 7100150 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 12476001 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 19419049 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 32504432 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr5 | 6051270 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 14630071 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 2574460 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 14278219 | C-T | Hetero | INTRON | |
| SBS | Chr7 | 16610903 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 17603322 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 20926970 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 29290310 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g281400 |
| SBS | Chr8 | 23749087 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 3273282 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 20786025 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 23621125 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 14836267 | T-A | Homo | INTERGENIC | |
| SBS | Chr11 | 14836268 | T-A | Homo | INTERGENIC | |
| SBS | Chr11 | 29305864 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 17341598 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 19499853 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 21367125 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 23791475 | C-T | Homo | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 580882 | 580883 | 1 | |
| Deletion | Chr10 | 7178702 | 7178706 | 4 | |
| Deletion | Chr5 | 9268297 | 9268298 | 1 | |
| Deletion | Chr2 | 10589038 | 10589039 | 1 | OsKitaake02g125100 |
| Deletion | Chr11 | 11353818 | 11353819 | 1 | |
| Deletion | Chr1 | 12432338 | 12432340 | 2 | |
| Deletion | Chr12 | 17341571 | 17341574 | 3 | |
| Deletion | Chr1 | 18179607 | 18179619 | 12 | |
| Deletion | Chr2 | 19845999 | 19846022 | 23 | |
| Deletion | Chr5 | 22817405 | 22817411 | 6 | |
| Deletion | Chr1 | 23919357 | 23919358 | 1 | |
| Deletion | Chr4 | 31241668 | 31241677 | 9 | OsKitaake04g243700 |
| Deletion | Chr1 | 32312377 | 32312378 | 1 | |
| Deletion | Chr4 | 35686426 | 35686433 | 7 | |
| Deletion | Chr1 | 39718875 | 39718887 | 12 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 4559420 | 4559423 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 27714002 | 28037217 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 21047852 | Chr1 | 19438730 | 2 |