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Mutant Information

Mutant Name	FN4188-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4188-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3549093 T-G Hetero INTRON
SBS Chr1 24656102 T-A Hetero INTERGENIC
SBS Chr1 31368244 C-T Hetero INTERGENIC
SBS Chr1 39379304 G-A Hetero INTRON
SBS Chr2 11471935 C-T Homo INTERGENIC
SBS Chr2 11892004 T-A Homo INTERGENIC
SBS Chr2 27475594 G-A Homo INTERGENIC
SBS Chr3 9770880 T-A Hetero INTERGENIC
SBS Chr3 33450029 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g358000
SBS Chr4 6847047 G-C Hetero INTERGENIC
SBS Chr4 10671596 A-G Hetero INTERGENIC
SBS Chr5 15275686 G-A Homo INTERGENIC
SBS Chr5 15275687 G-A Homo INTERGENIC
SBS Chr5 25739005 G-A Hetero INTRON
SBS Chr6 14095716 T-A Hetero INTRON
SBS Chr6 14542692 C-T Homo INTERGENIC
SBS Chr6 20091116 A-G Hetero INTERGENIC
SBS Chr6 28477055 C-T Hetero INTERGENIC
SBS Chr7 16693994 C-T Hetero INTERGENIC
SBS Chr7 25436978 G-A Hetero INTERGENIC
SBS Chr8 5154741 A-G Hetero INTERGENIC
SBS Chr8 18029075 C-T Hetero INTERGENIC
SBS Chr8 18953655 C-T Hetero INTRON
SBS Chr8 21688699 C-T Hetero INTERGENIC
SBS Chr9 294321 T-G Hetero INTERGENIC
SBS Chr9 5406438 A-G Hetero INTERGENIC
SBS Chr9 8718696 G-A Hetero INTRON
SBS Chr9 9066692 A-G Hetero UTR_3_PRIME
SBS Chr9 12556299 C-T Hetero INTERGENIC
SBS Chr10 11722289 T-A Homo INTERGENIC
SBS Chr10 16033818 G-T Hetero INTRON
SBS Chr10 16416020 G-A Hetero INTERGENIC
SBS Chr10 19587241 C-T Hetero INTRON
SBS Chr11 15682475 A-G Hetero INTERGENIC
SBS Chr11 22079438 C-T Hetero INTERGENIC
SBS Chr12 25673818 T-A Hetero INTERGENIC

Deletions: 30

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 284406 284409 3
Deletion Chr12 835324 835325 1
Deletion Chr1 5066259 5066262 3
Deletion Chr8 5599846 5599848 2
Deletion Chr9 6865130 6865136 6
Deletion Chr4 7718213 7718223 10
Deletion Chr2 8186640 8186646 6
Deletion Chr1 10820582 10820583 1
Deletion Chr2 12500838 12500841 3
Deletion Chr4 13729972 13729973 1
Deletion Chr6 15914273 15914292 19
Deletion Chr2 16355744 16355753 9
Deletion Chr5 16644612 16644624 12
Deletion Chr10 17077001 17112000 34999 OsKitaake10g116803
Deletion Chr7 18476401 18476409 8
Deletion Chr5 18653390 18653391 1
Deletion Chr7 18829409 18829418 9
Deletion Chr11 19410234 19410251 17
Deletion Chr4 20185425 20185426 1
Deletion Chr8 20267381 20267382 1
Deletion Chr8 20491579 20491587 8
Deletion Chr3 21353305 21353322 17
Deletion Chr12 21460641 21460648 7
Deletion Chr5 23811275 23811278 3
Deletion Chr8 25384001 25548000 163999 27
Deletion Chr11 27395092 27395095 3
Deletion Chr5 29998544 29998546 2
Deletion Chr3 30556148 30556159 11
Deletion Chr3 33024102 33024105 3
Deletion Chr4 33368203 33368204 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 16539947 17108533 OsKitaake10g116803
Inversion Chr8 18279724 18573860 OsKitaake08g136100
Inversion Chr8 18282368 18573863
Inversion Chr1 32474435 32683918 OsKitaake01g328900
Inversion Chr1 32474439 32683930 OsKitaake01g328900

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 2787572 Chr8 10854438
Translocation Chr9 2789093 Chr8 10854425

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3549093	T-G	Hetero	INTRON
SBS	Chr1	24656102	T-A	Hetero	INTERGENIC
SBS	Chr1	31368244	C-T	Hetero	INTERGENIC
SBS	Chr1	39379304	G-A	Hetero	INTRON
SBS	Chr2	11471935	C-T	Homo	INTERGENIC
SBS	Chr2	11892004	T-A	Homo	INTERGENIC
SBS	Chr2	27475594	G-A	Homo	INTERGENIC
SBS	Chr3	9770880	T-A	Hetero	INTERGENIC
SBS	Chr3	33450029	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g358000
SBS	Chr4	6847047	G-C	Hetero	INTERGENIC
SBS	Chr4	10671596	A-G	Hetero	INTERGENIC
SBS	Chr5	15275686	G-A	Homo	INTERGENIC
SBS	Chr5	15275687	G-A	Homo	INTERGENIC
SBS	Chr5	25739005	G-A	Hetero	INTRON
SBS	Chr6	14095716	T-A	Hetero	INTRON
SBS	Chr6	14542692	C-T	Homo	INTERGENIC
SBS	Chr6	20091116	A-G	Hetero	INTERGENIC
SBS	Chr6	28477055	C-T	Hetero	INTERGENIC
SBS	Chr7	16693994	C-T	Hetero	INTERGENIC
SBS	Chr7	25436978	G-A	Hetero	INTERGENIC
SBS	Chr8	5154741	A-G	Hetero	INTERGENIC
SBS	Chr8	18029075	C-T	Hetero	INTERGENIC
SBS	Chr8	18953655	C-T	Hetero	INTRON
SBS	Chr8	21688699	C-T	Hetero	INTERGENIC
SBS	Chr9	294321	T-G	Hetero	INTERGENIC
SBS	Chr9	5406438	A-G	Hetero	INTERGENIC
SBS	Chr9	8718696	G-A	Hetero	INTRON
SBS	Chr9	9066692	A-G	Hetero	UTR_3_PRIME
SBS	Chr9	12556299	C-T	Hetero	INTERGENIC
SBS	Chr10	11722289	T-A	Homo	INTERGENIC
SBS	Chr10	16033818	G-T	Hetero	INTRON
SBS	Chr10	16416020	G-A	Hetero	INTERGENIC
SBS	Chr10	19587241	C-T	Hetero	INTRON
SBS	Chr11	15682475	A-G	Hetero	INTERGENIC
SBS	Chr11	22079438	C-T	Hetero	INTERGENIC
SBS	Chr12	25673818	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	284406	284409	3
Deletion	Chr12	835324	835325	1
Deletion	Chr1	5066259	5066262	3
Deletion	Chr8	5599846	5599848	2
Deletion	Chr9	6865130	6865136	6
Deletion	Chr4	7718213	7718223	10
Deletion	Chr2	8186640	8186646	6
Deletion	Chr1	10820582	10820583	1
Deletion	Chr2	12500838	12500841	3
Deletion	Chr4	13729972	13729973	1
Deletion	Chr6	15914273	15914292	19
Deletion	Chr2	16355744	16355753	9
Deletion	Chr5	16644612	16644624	12
Deletion	Chr10	17077001	17112000	34999	OsKitaake10g116803
Deletion	Chr7	18476401	18476409	8
Deletion	Chr5	18653390	18653391	1
Deletion	Chr7	18829409	18829418	9
Deletion	Chr11	19410234	19410251	17
Deletion	Chr4	20185425	20185426	1
Deletion	Chr8	20267381	20267382	1
Deletion	Chr8	20491579	20491587	8
Deletion	Chr3	21353305	21353322	17
Deletion	Chr12	21460641	21460648	7
Deletion	Chr5	23811275	23811278	3
Deletion	Chr8	25384001	25548000	163999	27
Deletion	Chr11	27395092	27395095	3
Deletion	Chr5	29998544	29998546	2
Deletion	Chr3	30556148	30556159	11
Deletion	Chr3	33024102	33024105	3
Deletion	Chr4	33368203	33368204	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	16539947	17108533	OsKitaake10g116803
Inversion	Chr8	18279724	18573860	OsKitaake08g136100
Inversion	Chr8	18282368	18573863
Inversion	Chr1	32474435	32683918	OsKitaake01g328900
Inversion	Chr1	32474439	32683930	OsKitaake01g328900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes