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Mutant Information

Mutant Name	FN4189-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4189-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13906628 G-A Hetero INTERGENIC
SBS Chr1 16113507 T-G Homo INTERGENIC
SBS Chr1 29808991 G-A Hetero INTERGENIC
SBS Chr1 30337034 G-A Hetero INTERGENIC
SBS Chr1 35796728 G-C Homo INTERGENIC
SBS Chr1 42375929 T-C Hetero INTERGENIC
SBS Chr2 6482414 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g087900
SBS Chr2 6674102 T-C Homo INTERGENIC
SBS Chr2 11377067 G-A Homo INTERGENIC
SBS Chr2 17222283 C-T Homo UTR_3_PRIME
SBS Chr3 690433 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g011200
SBS Chr3 34195643 G-C Hetero INTERGENIC
SBS Chr4 10991150 A-T Hetero INTERGENIC
SBS Chr4 16762397 A-T Homo INTRON
SBS Chr4 32051939 A-T Hetero INTERGENIC
SBS Chr4 32051940 A-T Hetero INTERGENIC
SBS Chr4 32072848 A-G Hetero INTERGENIC
SBS Chr4 33171965 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g270200
SBS Chr4 33171966 G-A Hetero SYNONYMOUS_CODING
SBS Chr4 33171967 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake04g270200
SBS Chr5 7890647 T-G Homo INTERGENIC
SBS Chr5 7890648 T-C Homo INTERGENIC
SBS Chr5 8925423 T-G Hetero INTERGENIC
SBS Chr5 9651383 T-A Homo INTERGENIC
SBS Chr5 13698292 G-A Homo INTERGENIC
SBS Chr6 27252676 C-T Homo INTERGENIC
SBS Chr7 26703109 T-C Homo INTERGENIC
SBS Chr8 26542734 G-A Hetero STOP_GAINED OsKitaake08g213300
SBS Chr9 4017730 C-G Hetero INTERGENIC
SBS Chr11 5831221 T-C Hetero INTERGENIC
SBS Chr11 18650513 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g144600
SBS Chr11 19115003 G-A Hetero INTERGENIC
SBS Chr11 20261502 A-C Hetero INTRON
SBS Chr11 24034894 G-C Homo INTERGENIC
SBS Chr11 26763429 C-T Homo INTERGENIC
SBS Chr12 13039577 T-C Homo INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 4967631 4967640 9
Deletion Chr8 4979658 4979659 1
Deletion Chr11 5911507 5911508 1
Deletion Chr1 8233040 8233049 9
Deletion Chr2 12206594 12206606 12
Deletion Chr1 12873152 12873160 8
Deletion Chr1 15826854 15826861 7
Deletion Chr4 17392794 17392795 1
Deletion Chr12 26416853 26416854 1
Deletion Chr12 26721056 26721058 2
Deletion Chr11 27021870 27021881 11

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 26912875 26912878 2
Insertion Chr6 26777433 26777436 2
Insertion Chr7 18906329 18906337 7
Insertion Chr7 26067596 26067598 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 7008300 7491005
Inversion Chr10 7008301 7491008
Inversion Chr9 17183368 17204862 OsKitaake09g128800
Inversion Chr9 17183379 17204872 OsKitaake09g128800

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 1138222 Chr2 2280548 2
Translocation Chr7 4893630 Chr1 29699016 OsKitaake07g059900
Translocation Chr7 4893891 Chr1 29699015 OsKitaake07g059900
Translocation Chr4 14328643 Chr2 2280592 OsKitaake02g034100
Translocation Chr4 14330310 Chr3 21529360
Translocation Chr7 17345261 Chr5 24253721 2
Translocation Chr7 17345521 Chr5 24253720 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13906628	G-A	Hetero	INTERGENIC
SBS	Chr1	16113507	T-G	Homo	INTERGENIC
SBS	Chr1	29808991	G-A	Hetero	INTERGENIC
SBS	Chr1	30337034	G-A	Hetero	INTERGENIC
SBS	Chr1	35796728	G-C	Homo	INTERGENIC
SBS	Chr1	42375929	T-C	Hetero	INTERGENIC
SBS	Chr2	6482414	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g087900
SBS	Chr2	6674102	T-C	Homo	INTERGENIC
SBS	Chr2	11377067	G-A	Homo	INTERGENIC
SBS	Chr2	17222283	C-T	Homo	UTR_3_PRIME
SBS	Chr3	690433	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g011200
SBS	Chr3	34195643	G-C	Hetero	INTERGENIC
SBS	Chr4	10991150	A-T	Hetero	INTERGENIC
SBS	Chr4	16762397	A-T	Homo	INTRON
SBS	Chr4	32051939	A-T	Hetero	INTERGENIC
SBS	Chr4	32051940	A-T	Hetero	INTERGENIC
SBS	Chr4	32072848	A-G	Hetero	INTERGENIC
SBS	Chr4	33171965	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g270200
SBS	Chr4	33171966	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	33171967	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g270200
SBS	Chr5	7890647	T-G	Homo	INTERGENIC
SBS	Chr5	7890648	T-C	Homo	INTERGENIC
SBS	Chr5	8925423	T-G	Hetero	INTERGENIC
SBS	Chr5	9651383	T-A	Homo	INTERGENIC
SBS	Chr5	13698292	G-A	Homo	INTERGENIC
SBS	Chr6	27252676	C-T	Homo	INTERGENIC
SBS	Chr7	26703109	T-C	Homo	INTERGENIC
SBS	Chr8	26542734	G-A	Hetero	STOP_GAINED	OsKitaake08g213300
SBS	Chr9	4017730	C-G	Hetero	INTERGENIC
SBS	Chr11	5831221	T-C	Hetero	INTERGENIC
SBS	Chr11	18650513	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g144600
SBS	Chr11	19115003	G-A	Hetero	INTERGENIC
SBS	Chr11	20261502	A-C	Hetero	INTRON
SBS	Chr11	24034894	G-C	Homo	INTERGENIC
SBS	Chr11	26763429	C-T	Homo	INTERGENIC
SBS	Chr12	13039577	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	4967631	4967640	9
Deletion	Chr8	4979658	4979659	1
Deletion	Chr11	5911507	5911508	1
Deletion	Chr1	8233040	8233049	9
Deletion	Chr2	12206594	12206606	12
Deletion	Chr1	12873152	12873160	8
Deletion	Chr1	15826854	15826861	7
Deletion	Chr4	17392794	17392795	1
Deletion	Chr12	26416853	26416854	1
Deletion	Chr12	26721056	26721058	2
Deletion	Chr11	27021870	27021881	11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	7008300	7491005
Inversion	Chr10	7008301	7491008
Inversion	Chr9	17183368	17204862	OsKitaake09g128800
Inversion	Chr9	17183379	17204872	OsKitaake09g128800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes