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Mutant Information

Mutant Name	FN419-Sredo [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN419-Sredo Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 18675250 C-T Hetero INTERGENIC
SBS Chr1 32743433 G-T Hetero INTERGENIC
SBS Chr3 7746778 T-C Hetero INTERGENIC
SBS Chr3 14532117 G-A Hetero INTERGENIC
SBS Chr3 17818155 A-G Hetero INTERGENIC
SBS Chr3 26222182 A-T Hetero INTERGENIC
SBS Chr3 29237258 G-A Homo UTR_5_PRIME
SBS Chr3 37126028 T-C Homo INTERGENIC
SBS Chr4 1927899 C-G Hetero INTERGENIC
SBS Chr4 7983337 C-T Hetero INTERGENIC
SBS Chr4 8487414 T-A Hetero INTERGENIC
SBS Chr4 13009566 A-G Hetero INTERGENIC
SBS Chr4 17990440 G-C Hetero INTERGENIC
SBS Chr4 35377817 T-A Hetero INTRON
SBS Chr4 36629215 C-T Hetero INTERGENIC
SBS Chr6 2894359 A-G Hetero INTRON
SBS Chr6 20226212 G-T Hetero INTERGENIC
SBS Chr6 27698713 C-T Hetero INTERGENIC
SBS Chr7 14638421 C-T Homo INTERGENIC
SBS Chr7 29340558 A-G Hetero INTERGENIC
SBS Chr10 5621446 G-A Hetero INTERGENIC
SBS Chr10 8798449 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g053300
SBS Chr10 12855360 A-C Homo INTERGENIC
SBS Chr10 13311279 G-C Hetero INTERGENIC
SBS Chr10 13839054 G-A Homo INTERGENIC
SBS Chr10 16148852 C-T Homo NON_SYNONYMOUS_CODING OsKitaake10g107900
SBS Chr11 1006733 C-T Hetero INTERGENIC
SBS Chr11 4590286 C-G Hetero INTERGENIC
SBS Chr11 20972861 T-A Hetero INTERGENIC
SBS Chr12 2784059 A-G Homo INTERGENIC
SBS Chr12 14064515 A-G Homo INTERGENIC
SBS Chr12 15238112 T-C Homo INTERGENIC
SBS Chr12 19602587 C-T Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 2007930 2007931 1 OsKitaake01g024500
Deletion Chr3 4329430 4329439 9
Deletion Chr4 4750480 4750489 9
Deletion Chr4 6378295 6378296 1
Deletion Chr9 7702699 7702700 1 OsKitaake09g043500
Deletion Chr1 8360619 8360621 2
Deletion Chr1 8643688 8643690 2
Deletion Chr10 12476447 12476448 1
Deletion Chr5 15429295 15429297 2
Deletion Chr2 15460304 15460305 1
Deletion Chr11 17620896 17620898 2
Deletion Chr11 26036750 26036751 1
Deletion Chr4 26925804 26925805 1
Deletion Chr4 26930765 26930766 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 15729071 15729076 4
Insertion Chr6 6769978 6769981 2
Insertion Chr6 26744194 26744197 2
Insertion Chr3 20044043 20044045 1
Insertion Chr8 8067714 8067716 1
Insertion Chr12 11689040 11689042 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 1341734 1662426 OsKitaake10g011700
Inversion Chr6 13705140 13830608
Inversion Chr6 13705620 13830621
Inversion Chr4 35404047 35503174 OsKitaake04g302000
Inversion Chr4 35404050 35503174 OsKitaake04g302000

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 2578922 Chr11 650210
Translocation Chr12 2579880 Chr11 650207

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18675250	C-T	Hetero	INTERGENIC
SBS	Chr1	32743433	G-T	Hetero	INTERGENIC
SBS	Chr3	7746778	T-C	Hetero	INTERGENIC
SBS	Chr3	14532117	G-A	Hetero	INTERGENIC
SBS	Chr3	17818155	A-G	Hetero	INTERGENIC
SBS	Chr3	26222182	A-T	Hetero	INTERGENIC
SBS	Chr3	29237258	G-A	Homo	UTR_5_PRIME
SBS	Chr3	37126028	T-C	Homo	INTERGENIC
SBS	Chr4	1927899	C-G	Hetero	INTERGENIC
SBS	Chr4	7983337	C-T	Hetero	INTERGENIC
SBS	Chr4	8487414	T-A	Hetero	INTERGENIC
SBS	Chr4	13009566	A-G	Hetero	INTERGENIC
SBS	Chr4	17990440	G-C	Hetero	INTERGENIC
SBS	Chr4	35377817	T-A	Hetero	INTRON
SBS	Chr4	36629215	C-T	Hetero	INTERGENIC
SBS	Chr6	2894359	A-G	Hetero	INTRON
SBS	Chr6	20226212	G-T	Hetero	INTERGENIC
SBS	Chr6	27698713	C-T	Hetero	INTERGENIC
SBS	Chr7	14638421	C-T	Homo	INTERGENIC
SBS	Chr7	29340558	A-G	Hetero	INTERGENIC
SBS	Chr10	5621446	G-A	Hetero	INTERGENIC
SBS	Chr10	8798449	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g053300
SBS	Chr10	12855360	A-C	Homo	INTERGENIC
SBS	Chr10	13311279	G-C	Hetero	INTERGENIC
SBS	Chr10	13839054	G-A	Homo	INTERGENIC
SBS	Chr10	16148852	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g107900
SBS	Chr11	1006733	C-T	Hetero	INTERGENIC
SBS	Chr11	4590286	C-G	Hetero	INTERGENIC
SBS	Chr11	20972861	T-A	Hetero	INTERGENIC
SBS	Chr12	2784059	A-G	Homo	INTERGENIC
SBS	Chr12	14064515	A-G	Homo	INTERGENIC
SBS	Chr12	15238112	T-C	Homo	INTERGENIC
SBS	Chr12	19602587	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	2007930	2007931	1	OsKitaake01g024500
Deletion	Chr3	4329430	4329439	9
Deletion	Chr4	4750480	4750489	9
Deletion	Chr4	6378295	6378296	1
Deletion	Chr9	7702699	7702700	1	OsKitaake09g043500
Deletion	Chr1	8360619	8360621	2
Deletion	Chr1	8643688	8643690	2
Deletion	Chr10	12476447	12476448	1
Deletion	Chr5	15429295	15429297	2
Deletion	Chr2	15460304	15460305	1
Deletion	Chr11	17620896	17620898	2
Deletion	Chr11	26036750	26036751	1
Deletion	Chr4	26925804	26925805	1
Deletion	Chr4	26930765	26930766	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	1341734	1662426	OsKitaake10g011700
Inversion	Chr6	13705140	13830608
Inversion	Chr6	13705620	13830621
Inversion	Chr4	35404047	35503174	OsKitaake04g302000
Inversion	Chr4	35404050	35503174	OsKitaake04g302000

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Variant Type

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Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes