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| Mutant Information |
|---|
| Mutant Name | FN4190-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4190-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5522992 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 15250422 | T-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr1 | 21237069 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 29471059 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 38180823 | C-A | Hetero | INTRON | |
| SBS | Chr1 | 43894064 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 4895806 | G-C | Hetero | INTRON | |
| SBS | Chr3 | 10562026 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 10562039 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 17338575 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 35337719 | C-T | Homo | INTRON | |
| SBS | Chr5 | 7826617 | T-C | Hetero | UTR_3_PRIME | |
| SBS | Chr5 | 28952358 | T-C | Homo | INTERGENIC | |
| SBS | Chr7 | 16907640 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 23759228 | C-A | Homo | UTR_3_PRIME | |
| SBS | Chr7 | 23759229 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr7 | 26480168 | A-G | Homo | UTR_3_PRIME | |
| SBS | Chr8 | 6776100 | T-C | Homo | INTERGENIC | |
| SBS | Chr8 | 7241001 | A-G | Homo | INTERGENIC | |
| SBS | Chr9 | 10038513 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 15086724 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 21058492 | G-T | Hetero | INTRON | |
| SBS | Chr11 | 11796843 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 11796844 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 20670129 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 23972968 | T-G | Homo | INTERGENIC | |
| SBS | Chr12 | 7755471 | G-T | Homo | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 793156 | 793157 | 1 | |
| Deletion | Chr2 | 976768 | 976771 | 3 | OsKitaake02g014000 |
| Deletion | Chr6 | 6853527 | 6853557 | 30 | |
| Deletion | Chr12 | 9611428 | 9611429 | 1 | |
| Deletion | Chr2 | 10216098 | 10216100 | 2 | |
| Deletion | Chr11 | 12929001 | 13013000 | 83999 | OsKitaake11g114300 |
| Deletion | Chr5 | 15418922 | 15418930 | 8 | |
| Deletion | Chr7 | 18540001 | 18788000 | 247999 | 18 |
| Deletion | Chr11 | 20433433 | 20433447 | 14 | |
| Deletion | Chr11 | 24661135 | 24661151 | 16 | OsKitaake11g199700 |
| Deletion | Chr6 | 30465739 | 30465740 | 1 | 2 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 17352396 | 17352404 | 7 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 2779682 | 3425395 | |
| Inversion | Chr3 | 2780064 | 3425414 |
Translocations: 6
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 557689 | Chr2 | 13973119 | |
| Translocation | Chr7 | 577029 | Chr2 | 13973113 | OsKitaake07g006400 |
| Translocation | Chr11 | 13015710 | Chr8 | 20919367 | OsKitaake08g156900 |
| Translocation | Chr11 | 16589044 | Chr1 | 19749442 | OsKitaake01g196600 |
| Translocation | Chr8 | 23887605 | Chr3 | 2780060 | OsKitaake08g184200 |
| Translocation | Chr8 | 23887612 | Chr3 | 2779690 | OsKitaake08g184200 |