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| Mutant Information |
|---|
| Mutant Name | FN420-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN420-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 26333745 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 13657989 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 25161247 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 2581859 | A-C | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 4590458 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g066300 |
| SBS | Chr3 | 10010361 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 14323394 | T-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 28147618 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 2903238 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 21444581 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 28151004 | A-G | Homo | INTERGENIC | |
| SBS | Chr5 | 5848317 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 6099409 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 10861235 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 25502506 | A-G | Homo | INTRON | |
| SBS | Chr6 | 11588573 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 15849468 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 20441153 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 2443503 | A-C | Homo | INTERGENIC | |
| SBS | Chr7 | 4523705 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 10404372 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 20837474 | C-A | Hetero | UTR_5_PRIME | |
| SBS | Chr8 | 19309073 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 26773408 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 15023443 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g103800 |
| SBS | Chr11 | 12857605 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 29597647 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 8666717 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 18718325 | T-C | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 647322 | 647328 | 6 | |
| Deletion | Chr7 | 3260869 | 3260871 | 2 | |
| Deletion | Chr1 | 4823731 | 4823736 | 5 | |
| Deletion | Chr5 | 5176086 | 5176087 | 1 | |
| Deletion | Chr4 | 6787555 | 6787571 | 16 | OsKitaake04g034500 |
| Deletion | Chr10 | 7172167 | 7172172 | 5 | |
| Deletion | Chr3 | 9990725 | 9990728 | 3 | |
| Deletion | Chr6 | 10971001 | 10989000 | 17999 | OsKitaake06g122200 |
| Deletion | Chr6 | 12367411 | 12367412 | 1 | |
| Deletion | Chr9 | 21337092 | 21337109 | 17 | |
| Deletion | Chr4 | 33655028 | 33655029 | 1 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 4440892 | 4440895 | 2 | |
| Insertion | Chr6 | 8635139 | 8635142 | 2 | |
| Insertion | Chr7 | 19814079 | 19814082 | 2 | |
| Insertion | Chr4 | 18345247 | 18345250 | 2 |
Inversions: 11
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 4995553 | 4995740 | |
| Inversion | Chr11 | 16765292 | 16765675 | OsKitaake11g132433 |
| Inversion | Chr4 | 17946675 | 18557915 | OsKitaake04g093300 |
| Inversion | Chr4 | 18542796 | 18557923 | OsKitaake04g093300 |
| Inversion | Chr4 | 23081974 | 23082126 | OsKitaake04g140400 |
| Inversion | Chr2 | 24349211 | 24469270 | |
| Inversion | Chr2 | 24349217 | 24469273 | |
| Inversion | Chr1 | 27257080 | 27257314 | OsKitaake01g265100 |
| Inversion | Chr1 | 30050491 | 30562565 | OsKitaake01g295700 |
| Inversion | Chr1 | 30050504 | 30562571 | OsKitaake01g295700 |
| Inversion | Chr4 | 30797434 | 30797629 | OsKitaake04g238100 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 1529912 | Chr4 | 15811981 | OsKitaake11g020200 |
| Translocation | Chr7 | 14127906 | Chr4 | 17946718 | |
| Translocation | Chr7 | 14127916 | Chr4 | 17947513 | |
| Translocation | Chr7 | 17186958 | Chr3 | 10538888 |