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Mutant Information

Mutant Name	FN4201-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4201-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17361673 C-T Homo INTERGENIC
SBS Chr1 27976840 G-C Hetero INTRON
SBS Chr2 7488606 G-T Homo INTERGENIC
SBS Chr2 10049411 C-A Homo INTERGENIC
SBS Chr2 15461666 G-A Homo INTERGENIC
SBS Chr2 26306544 C-T Hetero INTERGENIC
SBS Chr2 31846942 G-A Hetero INTERGENIC
SBS Chr3 32075878 C-T Homo INTERGENIC
SBS Chr3 37003615 G-A Homo INTRON
SBS Chr3 37359254 T-A Homo NON_SYNONYMOUS_CODING OsKitaake03g419600
SBS Chr4 9035549 T-A Homo INTERGENIC
SBS Chr4 18667668 C-A Hetero INTERGENIC
SBS Chr4 33154895 A-C Hetero INTRON
SBS Chr4 33711583 G-T Hetero INTRON
SBS Chr5 18599465 T-G Hetero INTERGENIC
SBS Chr5 20054295 C-T Hetero INTERGENIC
SBS Chr5 27492201 T-C Hetero INTERGENIC
SBS Chr6 1107094 C-A Hetero INTERGENIC
SBS Chr6 1636850 C-T Hetero INTERGENIC
SBS Chr6 3803187 T-A Hetero INTERGENIC
SBS Chr6 10603243 G-A Hetero START_GAINED
SBS Chr6 15685171 A-C Homo INTERGENIC
SBS Chr6 18215456 G-A Homo INTERGENIC
SBS Chr7 2909970 A-G Homo INTERGENIC
SBS Chr7 9422278 C-A Hetero INTERGENIC
SBS Chr8 21939492 T-C Hetero INTERGENIC
SBS Chr9 3143288 A-G Homo INTERGENIC
SBS Chr9 9653420 A-T Hetero INTRON
SBS Chr9 12999233 A-T Hetero INTRON
SBS Chr9 15212008 G-A Hetero INTERGENIC
SBS Chr10 2792762 G-C Hetero INTERGENIC
SBS Chr10 15457882 G-A Homo INTERGENIC
SBS Chr12 1803134 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g026900

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 238911 238916 5
Deletion Chr1 599955 599959 4 OsKitaake01g114300
Deletion Chr7 3370434 3370443 9
Deletion Chr7 5758912 5758916 4
Deletion Chr5 10627061 10627062 1
Deletion Chr11 18970426 18970427 1
Deletion Chr11 23799379 23799382 3
Deletion Chr3 27118962 27118968 6
Deletion Chr3 36371796 36371798 2
Deletion Chr1 40261272 40261284 12

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 28558829 28558832 2
Insertion Chr4 22816492 22816495 2
Insertion Chr10 10203940 10203943 2
Insertion Chr10 11989703 11989708 4
Insertion Chr10 13391073 13391076 2
Insertion Chr11 11117223 11117226 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr2 26680062 Chr1 3635157

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17361673	C-T	Homo	INTERGENIC
SBS	Chr1	27976840	G-C	Hetero	INTRON
SBS	Chr2	7488606	G-T	Homo	INTERGENIC
SBS	Chr2	10049411	C-A	Homo	INTERGENIC
SBS	Chr2	15461666	G-A	Homo	INTERGENIC
SBS	Chr2	26306544	C-T	Hetero	INTERGENIC
SBS	Chr2	31846942	G-A	Hetero	INTERGENIC
SBS	Chr3	32075878	C-T	Homo	INTERGENIC
SBS	Chr3	37003615	G-A	Homo	INTRON
SBS	Chr3	37359254	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g419600
SBS	Chr4	9035549	T-A	Homo	INTERGENIC
SBS	Chr4	18667668	C-A	Hetero	INTERGENIC
SBS	Chr4	33154895	A-C	Hetero	INTRON
SBS	Chr4	33711583	G-T	Hetero	INTRON
SBS	Chr5	18599465	T-G	Hetero	INTERGENIC
SBS	Chr5	20054295	C-T	Hetero	INTERGENIC
SBS	Chr5	27492201	T-C	Hetero	INTERGENIC
SBS	Chr6	1107094	C-A	Hetero	INTERGENIC
SBS	Chr6	1636850	C-T	Hetero	INTERGENIC
SBS	Chr6	3803187	T-A	Hetero	INTERGENIC
SBS	Chr6	10603243	G-A	Hetero	START_GAINED
SBS	Chr6	15685171	A-C	Homo	INTERGENIC
SBS	Chr6	18215456	G-A	Homo	INTERGENIC
SBS	Chr7	2909970	A-G	Homo	INTERGENIC
SBS	Chr7	9422278	C-A	Hetero	INTERGENIC
SBS	Chr8	21939492	T-C	Hetero	INTERGENIC
SBS	Chr9	3143288	A-G	Homo	INTERGENIC
SBS	Chr9	9653420	A-T	Hetero	INTRON
SBS	Chr9	12999233	A-T	Hetero	INTRON
SBS	Chr9	15212008	G-A	Hetero	INTERGENIC
SBS	Chr10	2792762	G-C	Hetero	INTERGENIC
SBS	Chr10	15457882	G-A	Homo	INTERGENIC
SBS	Chr12	1803134	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g026900

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	238911	238916	5
Deletion	Chr1	599955	599959	4	OsKitaake01g114300
Deletion	Chr7	3370434	3370443	9
Deletion	Chr7	5758912	5758916	4
Deletion	Chr5	10627061	10627062	1
Deletion	Chr11	18970426	18970427	1
Deletion	Chr11	23799379	23799382	3
Deletion	Chr3	27118962	27118968	6
Deletion	Chr3	36371796	36371798	2
Deletion	Chr1	40261272	40261284	12

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	26680062	Chr1	3635157

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes