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Mutant Information

Mutant Name	FN4202-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4202-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 602124 C-T Hetero INTERGENIC
SBS Chr1 5858743 A-C Homo INTERGENIC
SBS Chr1 10957852 G-A Homo INTERGENIC
SBS Chr1 20495127 G-C Hetero UTR_3_PRIME
SBS Chr1 31619329 G-A Hetero INTERGENIC
SBS Chr1 34695670 A-G Hetero UTR_3_PRIME
SBS Chr2 9504230 G-C Homo INTERGENIC
SBS Chr2 9897789 C-A Hetero INTERGENIC
SBS Chr2 9898227 G-T Hetero INTERGENIC
SBS Chr2 18171150 T-A Hetero INTERGENIC
SBS Chr2 21418989 T-C Hetero INTERGENIC
SBS Chr2 29056084 C-T Hetero INTERGENIC
SBS Chr2 29864403 C-T Hetero INTRON
SBS Chr2 31569646 C-T Homo INTERGENIC
SBS Chr3 27164401 A-G Hetero INTERGENIC
SBS Chr4 912936 C-G Homo INTERGENIC
SBS Chr4 10802832 G-A Hetero INTERGENIC
SBS Chr4 12775217 T-A Homo UTR_3_PRIME
SBS Chr4 19239038 A-T Homo INTERGENIC
SBS Chr5 13448019 G-T Hetero INTERGENIC
SBS Chr5 22944593 A-C Hetero INTERGENIC
SBS Chr6 1196131 C-A Hetero INTERGENIC
SBS Chr6 4148258 G-A Homo INTERGENIC
SBS Chr6 8658963 C-G Homo INTERGENIC
SBS Chr6 9044921 G-T Hetero UTR_3_PRIME
SBS Chr6 20969644 T-C Hetero INTERGENIC
SBS Chr7 2439425 C-T Hetero INTERGENIC
SBS Chr7 2697476 A-T Hetero INTERGENIC
SBS Chr7 16156373 C-A Hetero INTERGENIC
SBS Chr8 2796209 C-T Hetero INTERGENIC
SBS Chr8 15964550 G-A Homo INTRON
SBS Chr8 23751430 G-A Homo INTERGENIC
SBS Chr9 4951319 A-T Homo INTERGENIC
SBS Chr9 18551299 G-A Hetero INTERGENIC
SBS Chr10 8829447 A-G Homo INTERGENIC
SBS Chr10 18870699 C-T Homo INTERGENIC
SBS Chr10 19911031 C-T Hetero INTERGENIC
SBS Chr10 23912519 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g206500
SBS Chr11 6312259 C-A Hetero INTERGENIC
SBS Chr11 7748241 T-C Hetero INTERGENIC
SBS Chr11 8145028 G-A Hetero INTERGENIC
SBS Chr11 16020219 G-T Hetero INTERGENIC
SBS Chr11 16779267 C-T Hetero INTERGENIC
SBS Chr11 23517735 C-A Hetero INTERGENIC
SBS Chr12 20670888 C-T Homo INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1189033 1189043 10
Deletion Chr11 1286365 1286367 2
Deletion Chr7 2868866 2868874 8
Deletion Chr11 4938413 4938419 6
Deletion Chr9 4946941 4946952 11
Deletion Chr5 5783096 5783102 6
Deletion Chr1 6021111 6021113 2
Deletion Chr11 6659473 6659474 1
Deletion Chr3 7540459 7540460 1
Deletion Chr2 8176643 8176652 9
Deletion Chr11 10825773 10825775 2
Deletion Chr10 13151205 13151212 7
Deletion Chr12 14706876 14706888 12
Deletion Chr10 16811989 16811993 4
Deletion Chr8 17085256 17085257 1 OsKitaake08g130300
Deletion Chr7 22149914 22149916 2
Deletion Chr7 22650990 22650994 4
Deletion Chr10 24010254 24010257 3
Deletion Chr11 26419651 26419654 3
Deletion Chr7 27691687 27691691 4

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 16557409 16557412 2
Insertion Chr7 13120271 13120274 2

Inversions: 12

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 6718678 6848197
Inversion Chr5 6718691 6848236
Inversion Chr9 15965642 16610373 OsKitaake09g114000
Inversion Chr9 16610372 16715898 OsKitaake09g123600
Inversion Chr9 20483648 20532400 OsKitaake09g173300
Inversion Chr9 20483684 20532409 OsKitaake09g173300
Inversion Chr7 23155292 23171892 2
Inversion Chr7 23155305 23171897 2
Inversion Chr7 23775921 24246526 2
Inversion Chr7 23775950 24250691 2
Inversion Chr7 24990454 25038250 2
Inversion Chr7 24990476 25038261 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 16244240 Chr3 13060642
Translocation Chr12 21462911 Chr3 13060643

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	602124	C-T	Hetero	INTERGENIC
SBS	Chr1	5858743	A-C	Homo	INTERGENIC
SBS	Chr1	10957852	G-A	Homo	INTERGENIC
SBS	Chr1	20495127	G-C	Hetero	UTR_3_PRIME
SBS	Chr1	31619329	G-A	Hetero	INTERGENIC
SBS	Chr1	34695670	A-G	Hetero	UTR_3_PRIME
SBS	Chr2	9504230	G-C	Homo	INTERGENIC
SBS	Chr2	9897789	C-A	Hetero	INTERGENIC
SBS	Chr2	9898227	G-T	Hetero	INTERGENIC
SBS	Chr2	18171150	T-A	Hetero	INTERGENIC
SBS	Chr2	21418989	T-C	Hetero	INTERGENIC
SBS	Chr2	29056084	C-T	Hetero	INTERGENIC
SBS	Chr2	29864403	C-T	Hetero	INTRON
SBS	Chr2	31569646	C-T	Homo	INTERGENIC
SBS	Chr3	27164401	A-G	Hetero	INTERGENIC
SBS	Chr4	912936	C-G	Homo	INTERGENIC
SBS	Chr4	10802832	G-A	Hetero	INTERGENIC
SBS	Chr4	12775217	T-A	Homo	UTR_3_PRIME
SBS	Chr4	19239038	A-T	Homo	INTERGENIC
SBS	Chr5	13448019	G-T	Hetero	INTERGENIC
SBS	Chr5	22944593	A-C	Hetero	INTERGENIC
SBS	Chr6	1196131	C-A	Hetero	INTERGENIC
SBS	Chr6	4148258	G-A	Homo	INTERGENIC
SBS	Chr6	8658963	C-G	Homo	INTERGENIC
SBS	Chr6	9044921	G-T	Hetero	UTR_3_PRIME
SBS	Chr6	20969644	T-C	Hetero	INTERGENIC
SBS	Chr7	2439425	C-T	Hetero	INTERGENIC
SBS	Chr7	2697476	A-T	Hetero	INTERGENIC
SBS	Chr7	16156373	C-A	Hetero	INTERGENIC
SBS	Chr8	2796209	C-T	Hetero	INTERGENIC
SBS	Chr8	15964550	G-A	Homo	INTRON
SBS	Chr8	23751430	G-A	Homo	INTERGENIC
SBS	Chr9	4951319	A-T	Homo	INTERGENIC
SBS	Chr9	18551299	G-A	Hetero	INTERGENIC
SBS	Chr10	8829447	A-G	Homo	INTERGENIC
SBS	Chr10	18870699	C-T	Homo	INTERGENIC
SBS	Chr10	19911031	C-T	Hetero	INTERGENIC
SBS	Chr10	23912519	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g206500
SBS	Chr11	6312259	C-A	Hetero	INTERGENIC
SBS	Chr11	7748241	T-C	Hetero	INTERGENIC
SBS	Chr11	8145028	G-A	Hetero	INTERGENIC
SBS	Chr11	16020219	G-T	Hetero	INTERGENIC
SBS	Chr11	16779267	C-T	Hetero	INTERGENIC
SBS	Chr11	23517735	C-A	Hetero	INTERGENIC
SBS	Chr12	20670888	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1189033	1189043	10
Deletion	Chr11	1286365	1286367	2
Deletion	Chr7	2868866	2868874	8
Deletion	Chr11	4938413	4938419	6
Deletion	Chr9	4946941	4946952	11
Deletion	Chr5	5783096	5783102	6
Deletion	Chr1	6021111	6021113	2
Deletion	Chr11	6659473	6659474	1
Deletion	Chr3	7540459	7540460	1
Deletion	Chr2	8176643	8176652	9
Deletion	Chr11	10825773	10825775	2
Deletion	Chr10	13151205	13151212	7
Deletion	Chr12	14706876	14706888	12
Deletion	Chr10	16811989	16811993	4
Deletion	Chr8	17085256	17085257	1	OsKitaake08g130300
Deletion	Chr7	22149914	22149916	2
Deletion	Chr7	22650990	22650994	4
Deletion	Chr10	24010254	24010257	3
Deletion	Chr11	26419651	26419654	3
Deletion	Chr7	27691687	27691691	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	6718678	6848197
Inversion	Chr5	6718691	6848236
Inversion	Chr9	15965642	16610373	OsKitaake09g114000
Inversion	Chr9	16610372	16715898	OsKitaake09g123600
Inversion	Chr9	20483648	20532400	OsKitaake09g173300
Inversion	Chr9	20483684	20532409	OsKitaake09g173300
Inversion	Chr7	23155292	23171892	2
Inversion	Chr7	23155305	23171897	2
Inversion	Chr7	23775921	24246526	2
Inversion	Chr7	23775950	24250691	2
Inversion	Chr7	24990454	25038250	2
Inversion	Chr7	24990476	25038261	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes